Cromwell MatLab package. Cromwell is an implementation of our algorithms for low-level processing of mass spectrometry proteomics data. Cromwell represents our third attempt (at least) to find a method to process spectra that both works quickly and achieves reasonably good results. The name is thus derived from an historical pun: just as Oliver Cromwell became ruler of England by fashioning and leading the New Model Army, we intend to lead the way toward better proteomics data processing with our ”new model processor”.

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