GeneSrF: gene selection with random forests (v. 20070524). GeneSrF is a web tool for gene selection in classification problems that uses random forest. Two approaches for gene selection are used: one is targeted towards identifying small, non-redundant sets of genes that have good predictive performance. The second is a more heuristic graphical approach that can be used to identify large sets of genes (including redundant genes) related to the outcome of interest. The first approach is described in detail in this paper. The R code is available as an R package from CRAN or from this link. For further details see the help.

References in zbMATH (referenced in 25 articles )

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  1. Biau, Gérard; Scornet, Erwan: A random forest guided tour (2016)
  2. Scornet, Erwan: On the asymptotics of random forests (2016)
  3. Yang, Aijun; Li, Yunxian; Tang, Niansheng; Lin, Jinguan: Bayesian variable selection in multinomial probit model for classifying high-dimensional data (2015)
  4. Baraud, Yannick; Giraud, Christophe; Huet, Sylvie: Estimator selection in the Gaussian setting (2014)
  5. Bleich, Justin; Kapelner, Adam; George, Edward I.; Jensen, Shane T.: Variable selection for BART: an application to gene regulation (2014)
  6. Hapfelmeier, Alexander; Hothorn, Torsten; Ulm, Kurt; Strobl, Carolin: A new variable importance measure for random forests with missing data (2014)
  7. Williams, John K.: Using random forests to diagnose aviation turbulence (2014)
  8. Yeh, Ching-Chiang; Chi, Der-Jang; Lin, Yi-Rong: Going-concern prediction using hybrid random forests and rough set approach (2014)
  9. Deng, Houtao; Runger, George: Gene selection with guided regularized random forest (2013)
  10. Peng, Xinjun; Xu, Dong: A local information-based feature-selection algorithm for data regression (2013)
  11. Telaar, Anna; Repsilber, Dirk; Nürnberg, Gerd: Biomarker discovery: classification using pooled samples (2013)
  12. Hanczar, Blaise; Nadif, Mohamed: Ensemble methods for biclustering tasks (2012)
  13. Tsai, Chen-An; Huang, Chien-Hsun; Chang, Ching-Wei; Chen, Chun-Houh: Recursive feature selection with significant variables of support vectors (2012)
  14. Mendez, Guillermo; Lohr, Sharon: Estimating residual variance in random forest regression (2011)
  15. Verikas, A.; Gelzinis, A.; Bacauskiene, M.: Mining data with random forests: A survey and results of new tests (2011)
  16. Bühlmann, Peter: Remembrance of Leo Breiman (2010)
  17. Cutler, Adele: Remembering Leo Breiman (2010)
  18. De Bock, Koen W.; Coussement, Kristof; Van den Poel, Dirk: Ensemble classification based on generalized additive models (2010)
  19. Liu, Huawen; Liu, Lei; Zhang, Huijie: Ensemble gene selection for cancer classification (2010)
  20. Bandyopadhyay, Nirmalya; Kahveci, Tamer; Goodison, Steve; Sun, Y.; Ranka, Sanjay: Pathway-based feature selection algorithm for cancer microarray data (2009)

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