IsoRankN

IsoRankN: We describe IsoRankN (IsoRank-Nibble), a global multiple-network alignment tool based on spectral clustering on the induced graph of pairwise alignment scores. IsoRankN outperforms existing algorithms for global network alignment in coverage and consistency on multiple alignments of the five available eukaryotic networks. Being based on spectral methods, IsoRankN is both error-tolerant and computationally efficient.