MORGAN Tutorial: Introduction to lm_ibdtests: The program lm_ibdtests uses identity-by-descent (ibd) based and likelihood-ratio based statistics to construct linkage detection tests. The current version allows only discrete trait data (affected or unaffected or unknown phenotypic status).

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  1. Basu, S.; Stephens, M.; Pankow, J.S.; Thompson, E.A.: A likelihood-based trait-model-free approach for linkage detection of binary trait (2010)