Balibase

BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs.

Keywords for this software

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References in zbMATH (referenced in 21 articles )

Showing results 1 to 20 of 21.
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  1. Nguyen, Ken; Guo, Xuan; Pan, Yi: Multiple biological sequence alignment. Scoring functions, algorithms and evaluation (2016)
  2. Mora-Gutiérrez, Roman Anselmo; Lárraga-Ramírez, María E.; Rincón-García, Eric A.; Ponsich, Antonin; Ramírez-Rodríguez, Javier: Adaptation of the method of musical composition for solving the multiple sequence alignment problem (2015)
  3. Le Thi, Hoai An; Dinh, Tao Pham; Belghiti, Moulay: DCA based algorithms for multiple sequence alignment (MSA) (2014)
  4. Saeed, Fahad; Perez-Rathke, Alan; Gwarnicki, Jaroslaw; Berger-Wolf, Tanya; Khokhar, Ashfaq: A high performance multiple sequence alignment system for pyrosequencing reads from multiple reference genomes (2012) ioport
  5. Arthanari, Thiru S.; Le Thi, Hoai An: New formulations of the multiple sequence alignment problem (2011)
  6. Zhang, Gexiang: Quantum-inspired evolutionary algorithms: a survey and empirical study (2011)
  7. Arenas-Díaz, Edgar D.; Ochoterena, Helga; Rodríguez-Vázquez, Katya: Multiple sequence alignment using a genetic algorithm and GLOCSA (2009) ioport
  8. Richer, Jean-Michel; Derrien, Vincent; Hao, Jin-Kao: A new dynamic programming algorithm for multiple sequence alignment (2007)
  9. Althaus, Ernst; Caprara, Alberto; Lenhof, Hans-Peter; Reinert, Knut: A branch-and-cut algorithm for multiple sequence alignment (2006)
  10. Armano, Giuliano; Milanesi, Luciano; Orro, Alessandro: Using secondary structure information to perform multiple alignment (2005)
  11. Horng, Jorng-Tzong; Wu, Li-Cheng; Lin, Ching-Mei; Yang, Bing-He: A genetic algorithm for multiple sequence alignment (2005) ioport
  12. Wen, Zhining; Wang, Kelong; Li, Menglong; Nie, Fusheng; Yang, Yi: Analyzing functional similarity of protein sequences with discrete wavelet transform (2005)
  13. Zhang, Min; Fang, Weiwu; Zhang, Junhua; Chi, Zhongxian: MSAID: multiple sequence alignment based on a measure of information discrepancy (2005)
  14. Wang, Yi; Li, Kuo-Bin: An adaptive and iterative algorithm for refining multiple sequence alignment (2004)
  15. Lin, Kuang; Kleinjung, Jens; Taylor, William R.; Heringa, Jaap: Testing homology with contact accepted mutatiOn (CAO): A contact-based Markov model of protein evolution (2003)
  16. Schwikowski, Benno; Vingron, Martin: Weighted sequence graphs: Boosting iterated dynamic programming using locally suboptimal solutions (2003)
  17. Shyu, Conrad; Foster, James A.: Evolving consensus sequence for multiple sequence alignment with a genetic algorithm (2003)
  18. Edgar, Robert C.; Sjølander, Kimmen: Simultaneous sequence alignment and tree construction using hidden Markov models (2002)
  19. Morgenstern, B.: A simple and space-efficient fragment-chaining algorithm for alignment of DNA and protein sequences (2002)
  20. Zaroliagis, Christos D.: Implementations and experimental studies of dynamic graph algorithms (2002)

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