Balibase

BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs.

Keywords for this software

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References in zbMATH (referenced in 28 articles )

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  1. DeBlasio, Dan; Kececioglu, John: Parameter advising for multiple sequence alignment (2017)
  2. Keith, Jonathan M. (ed.): Bioinformatics. Volume I. Data, sequence analysis, and evolution (2017)
  3. Liers, Frauke; Martin, Alexander; Pape, Susanne: Binary Steiner trees: structural results and an exact solution approach (2016)
  4. Nguyen, Ken; Guo, Xuan; Pan, Yi: Multiple biological sequence alignment. Scoring functions, algorithms and evaluation (2016)
  5. Mora-Gutiérrez, Roman Anselmo; Lárraga-Ramírez, María E.; Rincón-García, Eric A.; Ponsich, Antonin; Ramírez-Rodríguez, Javier: Adaptation of the method of musical composition for solving the multiple sequence alignment problem (2015)
  6. Le Thi, Hoai An; Dinh, Tao Pham; Belghiti, Moulay: DCA based algorithms for multiple sequence alignment (MSA) (2014)
  7. Rodriguez, Abel; Schmidler, Scott C.: Bayesian protein structure alignment (2014)
  8. Saeed, Fahad; Perez-Rathke, Alan; Gwarnicki, Jaroslaw; Berger-Wolf, Tanya; Khokhar, Ashfaq: A high performance multiple sequence alignment system for pyrosequencing reads from multiple reference genomes (2012) ioport
  9. Arthanari, Thiru S.; Le Thi, Hoai An: New formulations of the multiple sequence alignment problem (2011)
  10. Zhang, Gexiang: Quantum-inspired evolutionary algorithms: a survey and empirical study (2011)
  11. Arenas-Díaz, Edgar D.; Ochoterena, Helga; Rodríguez-Vázquez, Katya: Multiple sequence alignment using a genetic algorithm and GLOCSA (2009) ioport
  12. Edgar, Robert C.: Optimizing substitution matrix choice and gap parameters for sequence alignment (2009) ioport
  13. Yue, Feng; Shi, Jian; Tang, Jijun: Simultaneous phylogeny reconstruction and multiple sequence alignment (2009) ioport
  14. Richer, Jean-Michel; Derrien, Vincent; Hao, Jin-Kao: A new dynamic programming algorithm for multiple sequence alignment (2007)
  15. Althaus, Ernst; Caprara, Alberto; Lenhof, Hans-Peter; Reinert, Knut: A branch-and-cut algorithm for multiple sequence alignment (2006)
  16. Armano, Giuliano; Milanesi, Luciano; Orro, Alessandro: Using secondary structure information to perform multiple alignment (2005)
  17. Horng, Jorng-Tzong; Wu, Li-Cheng; Lin, Ching-Mei; Yang, Bing-He: A genetic algorithm for multiple sequence alignment (2005) ioport
  18. Wen, Zhining; Wang, Kelong; Li, Menglong; Nie, Fusheng; Yang, Yi: Analyzing functional similarity of protein sequences with discrete wavelet transform (2005)
  19. Zhang, Min; Fang, Weiwu; Zhang, Junhua; Chi, Zhongxian: MSAID: multiple sequence alignment based on a measure of information discrepancy (2005)
  20. Wang, Yi; Li, Kuo-Bin: An adaptive and iterative algorithm for refining multiple sequence alignment (2004)

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