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SSAP

SSAP: Sequential Structure Alignment Program. Method for automatically comparing three dimensional protein structures using double dynamic programming.

Keywords for this software

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  • circular permutations
  • flexible alignment
  • Markov chain Monte Carlo
  • approximation algorithm
  • binding site alignment
  • statistical shape analysis
  • bioinformatics
  • external suffix trees
  • protein structure indexing
  • protein structure alignment
  • partial Procrustes distance
  • protein structure retrieval
  • NP-hardness
  • compact structural motif
  • Bayesian structural alignment

  • URL: www.biochem.ucl.ac.uk/...
  • InternetArchive
  • Authors: Orengo, C. A.; Taylor, W. R.

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  • Related software:
  • TM-align
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References in zbMATH (referenced in 7 articles )

Showing results 1 to 7 of 7.
y Sorted by year (citations)

  1. Ejlali, Nasim; Faghihi, Mohammad Reza; Sadeghi, Mehdi: Bayesian comparison of protein structures using partial Procrustes distance (2017)
  2. Veeramalai, Mallika; Gilbert, David; Valiente, Gabriel: An optimized TOPS+ comparison method for enhanced TOPS models (2010) ioport
  3. Zhang, Lei; Bailey, James; Konagurthu, Arun S.; Ramamohanarao, Kotagiri: A fast indexing approach for protein structure comparison (2010) ioport
  4. Bu, Dongbo; Li, Ming; Li, Shuai Cheng; Qian, Jianbo; Xu, Jinbo: Finding compact structural motifs (2009)
  5. Gao, Feng; Zaki, Mohammed J.: PSIST: a scalable approach to indexing protein structures using suffix trees (2008)
  6. Wang, Lin; Qiu, Yuqing; Wang, Jiguang; Zhang, Xiangsun: Recognition of structure similarities in proteins (2008)
  7. Shatsky, Maxim; Nussinov, Ruth; Wolfson, Haim J.: MultiProt -- A multiple protein structural alignment algorithm (2002)

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    • Top MSC classes
      • 62 Statistics
      • 68 Computer science
      • 92 Applications of...

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