• DBAli tools

  • Referenced in 2 articles [sw16872]
  • DBAli database to leverage the structural information deposited in the Protein Data Bank (PDB). These ... program that allows users to input the 3D coordinates of a protein structure for comparison...
  • DEFROST

  • Referenced in 5 articles [sw16364]
  • inflation, dynamical instability can rapidly deposit the energy of homogeneous cold inflaton into excitations ... calculations, and is fully instrumented for 3D visualization. We reproduce previously published results on preheating...
  • RNA FRABASE

  • Referenced in 2 articles [sw20771]
  • notation. The algorithm searching for the requested 3D RNA fragments is very efficient ... derived from 1065 protein data bank (PDB)-deposited RNA structures and their complexes...
  • ProtorP

  • Referenced in 2 articles [sw35300]
  • PROTORP server analyses protein–protein associations in 3D structures. The server calculates a series ... protein associations or large datasets of associations deposited in the PDB, or upload and analyse...
  • STING Millennium Suite

  • Referenced in 2 articles [sw35652]
  • Suite: integrated software for extensive analyses of 3d structures of proteins and their complexes. Results ... public pdb formatted files (structures not deposited at the RCSB/PDB), eliminating earlier requirement...
  • vec_decomposition

  • Referenced in 1 article [sw22287]
  • efficient and portable SIMD vectorization of current/charge deposition routines that are, along with the field ... algorithm was successfully implemented in the 3D skeleton PIC code PICSAR and tested on Haswell...
  • ANSYS

  • Referenced in 662 articles [sw00044]
  • ANSYS offers a comprehensive software suite that spans...
  • Gmsh

  • Referenced in 602 articles [sw00366]
  • Gmsh is a 3D finite element grid generator...
  • LAPACK

  • Referenced in 1642 articles [sw00503]
  • LAPACK is written in Fortran 90 and provides...
  • Maple

  • Referenced in 5124 articles [sw00545]
  • The result of over 30 years of cutting...
  • Matlab

  • Referenced in 12309 articles [sw00558]
  • MATLAB® is a high-level language and interactive...
  • R

  • Referenced in 8601 articles [sw00771]
  • R is a language and environment for statistical...
  • UMFPACK

  • Referenced in 369 articles [sw00989]
  • An ANSI C code for sparse LU factorization...
  • VODE

  • Referenced in 194 articles [sw01005]
  • VODE: A variable-coefficient ODE solver. This paper...
  • CLAWPACK

  • Referenced in 127 articles [sw01069]
  • Clawpack stands for “Conservation Laws Package” and was...
  • CUDA

  • Referenced in 1207 articles [sw03258]
  • The NVIDIA® CUDA® Toolkit provides a comprehensive development...
  • FFTW

  • Referenced in 499 articles [sw04126]
  • FFTW is a C subroutine library for computing...
  • FLUENT

  • Referenced in 425 articles [sw04263]
  • FLUENT is a Computational Fluid Dynamics (CFD) code...
  • OpenFOAM

  • Referenced in 406 articles [sw04317]
  • The OpenFOAM® (Open Field Operation and Manipulation) CFD...
  • ANSYS-CFX

  • Referenced in 97 articles [sw06391]
  • ANSYS CFX software is a high-performance, general...