• BayesDA

  • Referenced in 1310 articles [sw11008]
  • Functions and Datasets for the book ”Bayesian Data Analysis” Functions for Bayesian Data Analysis, with ... datasets from the book ”Bayesian data Analysis (second edition)” by Gelman, Carlin, Stern and Rubin...
  • rjags

  • Referenced in 66 articles [sw08039]
  • JAGS library for Bayesian data analysis. JAGS uses Markov Chain Monte Carlo (MCMC) to generate...
  • DPpackage

  • Referenced in 72 articles [sw10495]
  • DPpackage: Bayesian Semi- and Nonparametric Modeling in R. Data analysis sometimes requires the relaxation ... specification of the probability model. In the Bayesian context, this is accomplished by placing ... programs for the implementation of some Bayesian nonparametric and semiparametric models in R, DPpackage. Currently ... estimation, receiver operating characteristic curve analysis, interval-censored data, binary regression data, item response data...
  • FSL

  • Referenced in 45 articles [sw19797]
  • library of analysis tools for FMRI, MRI and DTI brain imaging data. It runs ... Beckmann, M. Jenkinson, S.M. Smith. Bayesian analysis of neuroimaging data in FSL. NeuroImage, 45:S173...
  • Amos

  • Referenced in 61 articles [sw06515]
  • models. Uses Bayesian analysis—to improve estimates of model parameters. Offers various data imputation methods...
  • HDDM

  • Referenced in 11 articles [sw16420]
  • hierarchical methods, allows for full Bayesian data analysis, and can handle outliers in the data ... background of the drift diffusion model and Bayesian inference. We then illustrate usage...
  • rethinking

  • Referenced in 10 articles [sw25139]
  • accompanies a course and book on Bayesian data analysis (McElreath 2016. Statistical Rethinking. CRC Press...
  • ConfBands

  • Referenced in 34 articles [sw12330]
  • bands with either Bayesian or frequentist properties. Simulations and data analysis support the proposed methods...
  • BaySeq

  • Referenced in 17 articles [sw10343]
  • baySeq: Empirical Bayesian analysis of patterns of differential expression in count data. Results: We propose...
  • DIYABC

  • Referenced in 9 articles [sw21021]
  • Bayesian computation inferences about population history using single nucleotide polymorphism, DNA sequence and microsatellite data ... comprehensive analysis of population history using approximate Bayesian computation on DNA polymorphism data. Version ... allows (i) the analysis of single nucleotide polymorphism data at large number of loci, apart ... sequence data, (ii) efficient Bayesian model choice using linear discriminant analysis on summary statistics...
  • iBAG

  • Referenced in 6 articles [sw32134]
  • iBAG: integrative Bayesian analysis of high-dimensional multiplatform genomics data. MOTIVATION: Analyzing data from multi ... development of the disease. Current data integration approaches are limited in that they ... Model: We propose an integrative Bayesian analysis of genomics data (iBAG) framework for identifying important...
  • DNest4

  • Referenced in 3 articles [sw25767]
  • DNest4 usage through examples including simple Bayesian data analysis, finite mixture models, and approximate Bayesian...
  • BGX

  • Referenced in 16 articles [sw06935]
  • implements an integrated Bayesian approach to the analysis of 3’ GeneChip data. The software takes...
  • cudaBayesreg

  • Referenced in 6 articles [sw24712]
  • Parallel Implementation of a Bayesian Multilevel Model for fMRI Data Analysis. Compute Unified Device Architecture ... Bayesian multilevel model for the analysis of brain fMRI data. A fMRI data set consists ... data to be processed, and the type of statistical analysis to perform in fMRI analysis ... proposed by Rossi, Allenby and McCulloch in ‘Bayesian Statistics and Marketing’, Chapter...
  • pscl

  • Referenced in 27 articles [sw07110]
  • Stanford University. Bayesian analysis of item-response theory (IRT) models, roll call analysis; computing highest ... zero-inflated and hurdle models for count data; goodness-of-fit measures for GLMs; data...
  • phytools

  • Referenced in 14 articles [sw10003]
  • analysis of comparative data from species. For example, the package includes functions for Bayesian ... lineage on a tree using continuous character data with ML; plotting lineage accumulation through time ... trees (such as a Bayesian posterior sample); conducting an analysis called stochastic character mapping...
  • bayes4psy

  • Referenced in 2 articles [sw29388]
  • tools. As a result, the use of Bayesian methods is limited to those that have ... data analysis that arises from psychology experiments and as a teaching tool for Bayesian statistics ... psychology. The package contains Bayesian t-test and bootstrapping and models for analyzing reaction times ... visualization tools for the modern Bayesian data analysis workflow...
  • epiABC

  • Referenced in 10 articles [sw23334]
  • inherent dependence of the data and the fact that they are usually incomplete. In this ... recent Approximate Bayesian Computation (ABC) methods for the analysis of such data by fitting...
  • stantargets

  • Referenced in 2 articles [sw38217]
  • extension to targets and cmdstanr for Bayesian data analysis. stantargets makes it super easy...
  • dlm

  • Referenced in 32 articles [sw04503]
  • likelihood, Kalman filtering and smoothing, and Bayesian analysis of Normal linear State Space models, also ... gives an introduction to statistical time series analysis by dynamic linear models. It covers ... suited for time series analysis, both for univariate and multivariate data. The main methods ... basic notions in Bayesian inference. The basic elements of Bayesian analysis for linear regression models...