• r-index

  • Referenced in 12 articles [sw34743]
  • index: An optimal space run-length Burrows-Wheeler transform full-text index...
  • BEETL

  • Referenced in 5 articles [sw23284]
  • indexing data structure based on the Burrows-Wheeler Transform (BWT), from which matches to individual...
  • deBWT

  • Referenced in 2 articles [sw23947]
  • deBWT: parallel construction of Burrows-Wheeler Transform for large collection of genomes with de Bruijn ... genomes to promote future genomics studies. Burrows-Wheeler Transform (BWT) is an important data structure...
  • libdivsufsort

  • Referenced in 3 articles [sw38865]
  • construct a suffix array and a Burrows-Wheeler transformed string from a given string over...
  • OLego

  • Referenced in 1 article [sw28865]
  • efficiently mapped using Burrows-Wheeler transform (BWT) and FM-index. This also makes it particularly...
  • tbwt

  • Referenced in 1 article [sw38968]
  • Benchmark. On undetected redundancy in the Burrows-Wheeler transform. The Burrows-Wheeler-Transform...
  • Valgrind

  • Referenced in 58 articles [sw04420]
  • Valgrind is an instrumentation framework for building dynamic...
  • Soap

  • Referenced in 38 articles [sw08915]
  • SOAP: short oligonucleotide alignment program. We have developed...
  • GATK

  • Referenced in 16 articles [sw12019]
  • The genome analysis toolkit: a MapReduce framework for...
  • CloudBurst

  • Referenced in 6 articles [sw12025]
  • CloudBurst: highly sensitive read mapping with MapReduce. Motivation...
  • UbiCrawler

  • Referenced in 33 articles [sw13197]
  • UbiCrawler: a scalable fully distributed web crawler. We...
  • SPAdes

  • Referenced in 12 articles [sw17004]
  • SPAdes: A New Genome Assembly Algorithm and Its...
  • ABySS

  • Referenced in 12 articles [sw17343]
  • ABySS: a parallel assembler for short read sequence...
  • KMC

  • Referenced in 4 articles [sw20510]
  • KMC — K-mer Counter is a utility designed...
  • Quicksort

  • Referenced in 180 articles [sw20694]
  • On the adaptiveness of Quicksort. Quicksort was first...
  • Find

  • Referenced in 85 articles [sw21614]
  • Proof of a program: Find. A proof is...