• GCTA

  • Referenced in 16 articles [sw23135]
  • GCTA: a tool for genome-wide complex trait analysis. For most human complex diseases ... friendly software tool called genome-wide complex trait analysis (GCTA), which was developed based ... whole genome for a complex trait rather than testing the association of any particular ... versatile tool to estimate and partition complex trait variation with large GWAS data sets...
  • ProbABEL

  • Referenced in 6 articles [sw10861]
  • identification of loci associated with complex traits. Currently, imputed single nucleotide polymorphisms (SNP) data ... proportional hazards models, respectively. For quantitative traits, the package also implements a fast two-step ... will facilitate future identification of complex trait loci...
  • TASSEL

  • Referenced in 5 articles [sw11446]
  • TASSEL: Software for association mapping of complex traits in diverse samples. Summary: Association analyses that...
  • TATES

  • Referenced in 3 articles [sw20044]
  • standard univariate GWAS to acquire one trait-based p-value, while correcting for correlations between ... view of the genetic architecture of complex traits. As the actual causal genotype-phenotype model ... usually unknown and probably phenotypically and genetically complex, TATES, available as an open source program ... identify novel causal variants, while the complexity of traits is no longer a limiting factor...
  • ForSim

  • Referenced in 2 articles [sw35346]
  • exploring the genetic architecture of complex traits with controlled truth. Many important problems in biology ... involve complex traits affected by multiple coding or regulatory parts of the genome. How well...
  • MORGAN

  • Referenced in 2 articles [sw08616]
  • grant GM-46255, Genetic Epidemiology of Complex Traits...
  • METAL

  • Referenced in 2 articles [sw28171]
  • commonly used approach for improving power complex traits gene mapping studies. METAL provides a rich...
  • P2BAT

  • Referenced in 2 articles [sw25497]
  • PBAT-analysis tools for binary and complex traits into R and makes them accessible through...
  • RSS

  • Referenced in 2 articles [sw23316]
  • example, they can estimate heritability of complex traits, allowing for both polygenic and sparse models...
  • MALDsoft

  • Referenced in 1 article [sw33852]
  • discovering genes that contribute to complex traits. This mapping approach uses samples from recently admixed ... feasible and attractive option for complex-trait mapping. In this article, we describe new statistical...
  • HTreeQA

  • Referenced in 1 article [sw20045]
  • throughput genotyping technology, the study of quantitative trait loci (QTL) has emerged as a promising ... understand the genetic basis of complex traits. Methodology development for the study of QTL recently ... direct input without phasing. HTreeQA can handle complex local population structures. It is suitable...
  • XPEB

  • Referenced in 1 article [sw33849]
  • overlap in the genetic architecture underlying the trait between the two populations. Reference: Coram ... Leveraging Multi-ethnic Evidence for Mapping Complex Traits in Minority Populations: An Empirical Bayes Approach...
  • TreeLD

  • Referenced in 1 article [sw20046]
  • association mapping and fine mapping of complex trait loci and a novel approach to visualizing...
  • dmGWAS

  • Referenced in 3 articles [sw29291]
  • their combined effects on mediating complex diseases and traits. Integrative testing of GWAS association data ... interactions between genes underlying the pathogenesis of complex diseases. METHODS: Here, we present a dense...
  • MTG2

  • Referenced in 1 article [sw31260]
  • algorithm for genetic analysis of complex traits using genome-wide SNPs in a linear mixed...
  • GLIDE

  • Referenced in 1 article [sw27656]
  • much of the phenotypic variance in complex traits. Here, we present GLIDE, which maps phenotypes...
  • GSAASeqSP

  • Referenced in 1 article [sw25397]
  • platform for investigating molecular underpinnings of complex traits and diseases arising from differential activity within...
  • BhGLM

  • Referenced in 3 articles [sw10342]
  • common variants, prediction of complex diseases and traits, gene-set and pathway analysis, and gene...
  • QTL Express

  • Referenced in 3 articles [sw24835]
  • Express: Mapping Quantitative Trait Loci in Simple and Complex Pedigrees. QTL Express is the first...
  • LOT

  • Referenced in 2 articles [sw35330]
  • methods address binary or quantitative traits. However, many complex diseases and human conditions, particularly behavioral ... tool that performs linkage analysis of ordinal traits for pedigree data. It implements a latent...