• Servalcat

  • Referenced in 1 article [sw42032]
  • calculation using Servalcat. In 2020, cryo-EM single-particle analysis achieved true atomic resolution thanks ... difference map, which is derived from Bayesian statistics. This map helps manual and automatic model ... map helps in the visualization of weak features including hydrogen densities. Although hydrogen densities...
  • R

  • Referenced in 9832 articles [sw00771]
  • R is a language and environment for statistical...
  • MIRA

  • Referenced in 1 article [sw02392]
  • MIRA is a multi-pass DNA sequence data...
  • STAR

  • Referenced in 15 articles [sw02515]
  • STAR: ultrafast universal RNA-seq aligner. Motivation: Accurate...
  • SDPT3

  • Referenced in 697 articles [sw04009]
  • This software is designed to solve conic programming...
  • Bioconductor

  • Referenced in 320 articles [sw04205]
  • Bioconductor provides tools for the analysis and comprehension...
  • CVX

  • Referenced in 832 articles [sw04594]
  • CVX is a modeling system for constructing and...
  • GlobPlot

  • Referenced in 7 articles [sw06213]
  • GlobPlot: exploring protein sequences for globularity and disorder...
  • Biopython

  • Referenced in 20 articles [sw07357]
  • Biopython: freely available Python tools for computational molecular...
  • MAFFT

  • Referenced in 46 articles [sw08304]
  • MAFFT: Multiple alignment program for amino acid or...
  • Manopt

  • Referenced in 117 articles [sw08493]
  • Manopt, a Matlab toolbox for optimization on manifolds...
  • Soap

  • Referenced in 38 articles [sw08915]
  • SOAP: short oligonucleotide alignment program. We have developed...
  • EMan

  • Referenced in 12 articles [sw09056]
  • EMAN: Semiautomated Software for High-Resolution Single-Particle...
  • PyMOL

  • Referenced in 39 articles [sw09662]
  • PyMOL is a powerful and comprehensive molecular visualization...
  • HMMER

  • Referenced in 19 articles [sw10514]
  • HMMER web server: interactive sequence similarity searching. HMMER...
  • bioperl

  • Referenced in 23 articles [sw10579]
  • The bioperl toolkit: Perl modules for the life...
  • Sweave

  • Referenced in 44 articles [sw10621]
  • Sweave is a tool that allows to embed...
  • EMBOSS

  • Referenced in 35 articles [sw10917]
  • EMBOSS is ”The European Molecular Biology Open Software...