• Starcode

  • Referenced in 2 articles [sw28773]
  • unknown reference such as random DNA barcodes. In this case, error correction can be done ... comparison of all the barcodes, which is a computationally complex problem. Results: Here, we address...
  • Matlab

  • Referenced in 13544 articles [sw00558]
  • MATLAB® is a high-level language and interactive...
  • R

  • Referenced in 9969 articles [sw00771]
  • R is a language and environment for statistical...
  • Graphviz

  • Referenced in 90 articles [sw01283]
  • Graphviz is open source graph visualization software. Graph...
  • STAR

  • Referenced in 14 articles [sw02515]
  • STAR: ultrafast universal RNA-seq aligner. Motivation: Accurate...
  • SPIN

  • Referenced in 723 articles [sw03455]
  • Spin is a popular open-source software tool...
  • Pajek

  • Referenced in 154 articles [sw03707]
  • Pajek -- analysis and visualization of large networks. Pajek...
  • CPLEX

  • Referenced in 2773 articles [sw04082]
  • IBM® ILOG® CPLEX® offers C, C++, Java, .NET...
  • Bioconductor

  • Referenced in 319 articles [sw04205]
  • Bioconductor provides tools for the analysis and comprehension...
  • LIBSVM

  • Referenced in 1185 articles [sw04879]
  • LIBSVM is a library for Support Vector Machines...
  • edgeR

  • Referenced in 53 articles [sw06936]
  • edgeR: a Bioconductor package for differential expression analysis...
  • Biopython

  • Referenced in 20 articles [sw07357]
  • Biopython: freely available Python tools for computational molecular...
  • MrBayes

  • Referenced in 60 articles [sw07715]
  • MrBayes: Bayesian Inference of Phylogeny. MrBayes is a...
  • PAUP*

  • Referenced in 57 articles [sw07834]
  • PAUP*: phylogenetic analysis under parsimony. PAUP* version 4.0...
  • Scikit

  • Referenced in 611 articles [sw08058]
  • Scikit-learn: machine learning in python. Scikit-learn...
  • Cytoscape

  • Referenced in 80 articles [sw09080]
  • Cytoscape: A Software Environment for Integrated Models of...
  • HMMER

  • Referenced in 19 articles [sw10514]
  • HMMER web server: interactive sequence similarity searching. HMMER...
  • EMBOSS

  • Referenced in 35 articles [sw10917]
  • EMBOSS is ”The European Molecular Biology Open Software...