• DecoyFinder

  • Referenced in 1 article [sw16043]
  • Tool for finding decoy molecule sets for given active ligand sets. DecoyFinder is a graphical ... tool which helps finding sets of decoy molecules for a given group of active ligands ... maximum Tanimoto value threshold can be set between decoys ... order assure chemical diversity in the decoy set...
  • 3DRobot

  • Referenced in 0 articles [sw34254]
  • provide high-quality protein structural decoy sets for designing and training protein folding force field...
  • DeepVS

  • Referenced in 4 articles [sw16458]
  • complexes by modeling the compound as a set of atom contexts that is further processed ... evaluate DeepVS on the Directory of Useful Decoys (DUD), using the output of two docking...
  • CHARMM

  • Referenced in 115 articles [sw05953]
  • CHARMM (Chemistry at HARvard Macromolecular Mechanics). CHARMM models...
  • ORSEE

  • Referenced in 151 articles [sw11710]
  • ORSEE is a web-based Online Recruitment System...
  • SCWRL4

  • Referenced in 7 articles [sw22393]
  • Improved prediction of protein side-chain conformations with...
  • iPPI-Esml

  • Referenced in 26 articles [sw22413]
  • iPPI-Esml: An ensemble classifier for identifying the...
  • iRSpot-PseDNC

  • Referenced in 65 articles [sw22437]
  • iRSpot-PseDNC: identify recombination spots with pseudo dinucleotide...
  • iNitro-Tyr

  • Referenced in 22 articles [sw22450]
  • iNitro-Tyr: prediction of nitrotyrosine sites in proteins...
  • GenThreader

  • Referenced in 10 articles [sw35746]
  • Fold Recognition (GenTHREADER). GenThreader: Detect distant homology to...
  • 3DIGARS

  • Referenced in 1 article [sw36904]
  • 3DIGARS-PSP: A Novel Statistical Energy Function and...