• fdrtool

  • Referenced in 29 articles [sw08196]
  • both tail area-based false discovery rates (Fdr) as well as local false discovery rates ... fdr) for a variety of null models (p-values, z-scores, correlation coefficients, t-scores...
  • ORIOGEN

  • Referenced in 16 articles [sw07654]
  • that of the false discovery rate (FDR) relies on the number of bootstraps used ... calculations while ensuring the control of the FDR. The proposed algorithm results in a substantial ... Benjamini-Hochberg (BH) procedure, the standard FDR methodology which was the proposed methodology achieved...
  • multtest

  • Referenced in 22 articles [sw08262]
  • false positives (TPPFP), and false discovery rate (FDR). Several choices of bootstrap-based null distribution...
  • FDRSeg

  • Referenced in 12 articles [sw16730]
  • FDR-control in multiscale change-point segmentation. Fast multiple change-point segmentation methods, which additionally ... FDRSeg, which controls the false discovery rate (FDR) in the sense that the number ... asymptotic upper bound for its FDR in a Gaussian setting, which allows to calibrate...
  • seq.f95

  • Referenced in 7 articles [sw25839]
  • Calculation of Critical Values for Somerville’s FDR Procedures. A Fortran 95 program has been ... step-up and step-down FDR procedures developed by Somerville (2004). The program allows ... arbitrary selection of number of hypotheses, FDR rate, one- or two-sided hypotheses, common correlation ... critical values or steps in an FDR procedure. The program can also be used...
  • MCFDR

  • Referenced in 7 articles [sw11180]
  • simple, novel algorithm for false discovery rate (FDR) modulated sequential Monte Carlo (MC) multiple hypothesis ... samples across tests and calculating intermediate FDR values for the collection of tests. MC sampling ... based on a threshold on FDR. An essential property of the algorithm is that...
  • EFDR

  • Referenced in 8 articles [sw11106]
  • EFDR: Wavelet-Based Enhanced FDR for Signal Detection in Noisy Images. Enhanced False Discovery Rate ... power of EFDR exceeds that of standard FDR, which would carry out tests on every...
  • qvalue

  • Referenced in 8 articles [sw22383]
  • estimates their q-values and local FDR values. The q-value of a test measures ... particular test is called significant. The local FDR measures the posterior probability the null hypothesis...
  • colcor

  • Referenced in 5 articles [sw12289]
  • gene, and apply false discovery rate (FDR) controlling methods to find interesting genes. For example ... empirical cdf of Z is important for FDR methods, since its mean and variance determine ... bias and variance of FDR estimates. Efron (2009b) has shown that if the columns...
  • idr

  • Referenced in 7 articles [sw11205]
  • irreproducible discovery rate” (IDR) analogous to the FDR. This score can be computed at each...
  • smoothfdr

  • Referenced in 4 articles [sw27319]
  • spatial structure in large multiple-testing problems. FDR smoothing automatically finds spatially localized regions ... biologically plausible than those detected by existing FDR-controlling methods. For a detailed description ... FDR smoothing works, see the paper on arXiv...
  • BaySTDetect

  • Referenced in 4 articles [sw20750]
  • Bayesian estimate of the false discovery rate (FDR). A comprehensive simulation study has demonstrated ... patterns in addition to estimating well the FDR. The proposed method is applied retrospectively...
  • dSTEM

  • Referenced in 3 articles [sw36073]
  • strong control of the False Discovery Rate (FDR) and power consistency, as the length ... jumps get large. Simulations show that FDR levels are maintained in non-asymptotic conditions...
  • someMTP

  • Referenced in 4 articles [sw11118]
  • FDR control with pseudo-gatekeeping based on a possibly data driven order of the hypotheses...
  • fdrDiscreteNull

  • Referenced in 2 articles [sw24761]
  • known that current false discovery rate (FDR) procedures can be very conservative when applied ... package implements more powerful weighted or adaptive FDR procedures for FDR control and estimation...
  • siggenes

  • Referenced in 3 articles [sw11308]
  • estimation of the False Discovery Rate (FDR) using both the Significance Analysis of Microarrays...
  • NAT2TEST

  • Referenced in 3 articles [sw16844]
  • formal conformance relation using tools like FDR and Z3, in which case the test generation...
  • EFICAz

  • Referenced in 3 articles [sw35281]
  • multiple Prosite patterns of high specificity. For FDR (i.e. conserved positions in an enzyme family...
  • WebArray

  • Referenced in 3 articles [sw37316]
  • empirical bayes statistical analysis, false discovery rate (FDR) estimation, chromosomal mapping for genome comparison. Conclusion...
  • multitest

  • Referenced in 2 articles [sw08130]
  • false positives (TPPFP), and false discovery rate (FDR). Several choices of bootstrap-based null distribution...