• Fiji

  • Referenced in 30 articles [sw09754]
  • Fiji: an open-source platform for biological-image...
  • ode23s

  • Referenced in 309 articles [sw10137]
  • ode23s: Solve stiff differential equations; low order method...
  • STOCHSIMGPU

  • Referenced in 6 articles [sw10711]
  • STOCHSIMGPU: parallel stochastic simulation for the systems biology...
  • FFTbor2D

  • Referenced in 2 articles [sw11717]
  • Given an RNA sequence having metastable secondary structures...
  • ImageJ

  • Referenced in 77 articles [sw12531]
  • ImageJ is a public domain Java image processing...
  • SABRE

  • Referenced in 7 articles [sw12884]
  • SABRE: A tool for stochastic analysis of biochemical...
  • libSBML

  • Referenced in 13 articles [sw12937]
  • libSBML: An API library for SBML. Summary: LibSBML...
  • PySB

  • Referenced in 12 articles [sw13437]
  • PySB is a framework for building mathematical models...
  • Frank

  • Referenced in 7 articles [sw13659]
  • The Frank package. An experimental programming language with...
  • Julia

  • Referenced in 472 articles [sw13986]
  • Julia: A fast dynamic language for technical computing...
  • JuMP

  • Referenced in 126 articles [sw16108]
  • JuMP: A Modeling Language for Mathematical Optimization. JuMP...
  • Bio-SPICE

  • Referenced in 10 articles [sw17246]
  • Bio-SPICE: Biological Simulation Program for Intra- and...
  • STEPS

  • Referenced in 18 articles [sw17866]
  • STEPS: Modeling and Simulating Complex Reaction-Diffusion Systems...
  • HRSSA

  • Referenced in 6 articles [sw18041]
  • HRSSA - efficient hybrid stochastic simulation for spatially homogeneous...
  • MesoRD

  • Referenced in 32 articles [sw18202]
  • Stochastic reaction-diffusion simulation with MesoRD. Summary: MesoRD...
  • MRG32k3a

  • Referenced in 29 articles [sw18715]
  • Good parameters and implementations for combined multiple recursive...