• Gviz

• Referenced in 2 articles [sw17311]
• Visualizing Genomic Data Using Gviz and Bioconductor. The Gviz package offers a flexible framework...

• R

• Referenced in 9969 articles [sw00771]
• R is a language and environment for statistical...

• STAR

• Referenced in 14 articles [sw02515]
• STAR: ultrafast universal RNA-seq aligner. Motivation: Accurate...

• Bioconductor

• Referenced in 319 articles [sw04205]
• Bioconductor provides tools for the analysis and comprehension...

• oligo

• Referenced in 9 articles [sw06102]
• (R) A package to analyze oligonucleotide arrays (expression/SNP/tiling/exon...

• WEKA

• Referenced in 305 articles [sw06435]
• WEKA: Waikato Environment for Knowledge Analysis. WEKA is...

• edgeR

• Referenced in 53 articles [sw06936]
• edgeR: a Bioconductor package for differential expression analysis...

• RankProd

• Referenced in 6 articles [sw07961]
• RankProd: Rank Product method for identifying differentially expressed...

• Soap

• Referenced in 38 articles [sw08915]
• SOAP: short oligonucleotide alignment program. We have developed...

• Sweave

• Referenced in 45 articles [sw10621]
• Sweave is a tool that allows to embed...

• knitr

• Referenced in 66 articles [sw11224]
• knitr: A General-Purpose Package for Dynamic Report...

• snpStats

• Referenced in 7 articles [sw11396]
• snpStats: SnpMatrix and XSnpMatrix classes and methods. Bioconductor...

• C4.5

• Referenced in 1164 articles [sw12176]
• C4.5: programs for machine learning. (C4.5 has been...

• metafor

• Referenced in 33 articles [sw12291]
• metafor: Meta-Analysis Package for R. A comprehensive...

• shiny

• Referenced in 112 articles [sw13816]
• R package shiny: Web Application Framework for R...

• KEGG

• Referenced in 280 articles [sw13866]
• KEGG: Kyoto Encyclopedia of Genes and Genomes. KEGG...

• Biostrings

• Referenced in 4 articles [sw14509]
• Bioconductor package. String objects representing biological sequences, and...

• VCFtools

• Referenced in 6 articles [sw14582]
• VCFtools is a program package designed for working...

• MEME

• Referenced in 13 articles [sw15711]
• MEME: discovering and analyzing DNA and protein sequence...

• BLAT

• Referenced in 36 articles [sw16891]
• BLAT — The BLAST-Like Alignment Tool. Analyzing vertebrate...