• rmarkdown

  • Referenced in 21 articles [sw16897]
  • R package rmarkdown: Dynamic Documents for R. Convert...
  • HTSeq

  • Referenced in 8 articles [sw16898]
  • HTSeq – A Python framework to work with high...
  • Galaxy

  • Referenced in 12 articles [sw16927]
  • Galaxy: A platform for interactive large-scale genome...
  • FastQC

  • Referenced in 8 articles [sw16946]
  • FastQC: A quality control tool for high throughput...
  • TopHat

  • Referenced in 23 articles [sw17157]
  • TopHat2: accurate alignment of transcriptomes in the presence...
  • BioMart

  • Referenced in 3 articles [sw17171]
  • BioMart: a data federation framework for large collaborative...
  • GMAP

  • Referenced in 3 articles [sw17275]
  • GMAP: a genomic mapping and alignment program for...
  • IGV

  • Referenced in 3 articles [sw17276]
  • Integrative Genomics Viewer (IGV): high-performance genomics data...
  • AnnotationDbi

  • Referenced in 2 articles [sw17278]
  • AnnotationDbi: annotation database interface. R package. Provides user...
  • biomaRt

  • Referenced in 3 articles [sw17280]
  • biomaRt: interface to BioMart databases (e.g. Ensembl, COSMIC...
  • BSgenome

  • Referenced in 3 articles [sw17283]
  • BSgenome: infrastructure for Biostrings-based genome data packages...
  • GEOquery

  • Referenced in 10 articles [sw17285]
  • GEOquery: a bridge between the Gene Expression Omnibus...
  • ExpTreeDB

  • Referenced in 1 article [sw17286]
  • ExpTreeDB: web-based query and visualization of manually...
  • GeneSigDB

  • Referenced in 4 articles [sw17287]
  • GeneSigDB: a manually curated database and resource for...