
PATH 4.0
 Referenced in 1 article
[sw40006]
 agentbased evolving network simulation for modeling HIV transmission clusters We present the progression ... genetically similar, indicating rapid HIV transmission where HIV prevention resources are needed to improve health ... newly developed agentbased evolving network modeling (ABENM) technique and evolving contact network algorithm (ECNA ... HIV Epidemic strategy. While surveillance is critical for detecting clusters, a model in conjunction with...

HIV.LifeTables
 Referenced in 1 article
[sw36492]
 package HIV.LifeTables: HIV calibrated model life tables for countries with generalized HIV epidemics. The functions...

Mtreemix
 Referenced in 4 articles
[sw23824]
 genetic changes. They have been applied to model the accumulation of chromosomal gains and losses ... HIV genome. Mtreemix is a software package for estimating mutagenetic trees mixture models from observed...

tlmec
 Referenced in 14 articles
[sw11119]
 inference for linear and nonlinear mixed effects models with censored response (NLMEC/LMEC) based ... tlmec. It is applied to analyze longitudinal HIV viral load data in two recent AIDS...

geno2pheno
 Referenced in 1 article
[sw34192]
 predicts drug resistance of HIV1 samples using the statistical model of geno2pheno[resistance...

jpHMM
 Referenced in 4 articles
[sw10925]
 jpHMM (jumping profile Hidden Markov Model) is a probabilistic approach to compare a sequence ... tool for the detection of recombinations in HIV1 and hepatitis B virus (HBV) genomes...

UNAIDS
 Referenced in 4 articles
[sw08197]
 Projection Package (EPP) for estimating and projecting HIV prevalence levels in countries with generalised epidemics ... describes the process of defining and modelling a national epidemic in terms of locally relevant...

Treevolve
 Referenced in 1 article
[sw37007]
 Population dynamics of HIV1 inferred from gene sequences. .. A program to simulate sequence alignments ... under certain population dynamic scenarios and mutational models, called Treevolve, is available on the World...

NIMROD
 Referenced in 1 article
[sw35079]
 model quality of fit. In pharmacokinetics models, first, we evaluate the properties of this algorithm ... data from the PUZZLE clinical trial in HIV infected patients...

SPMM
 Referenced in 1 article
[sw34263]
 develop a mathematical tool for early HIV1 evolution within a subject whose infection originates ... multiple viral variants. The shifted Poisson mixture model (SPMM) provides a quantitative guideline for segregating ... most important parameters for deciphering HIV1 transmission and predicting the rate of disease progression...

EEBoost
 Referenced in 1 article
[sw26353]
 prediction in standard regression problems. However, simple models may misspecify or fail to capture important ... James estimating equations to data from an HIV treatment trial, where...

ADOLC
 Referenced in 249 articles
[sw00019]
 ADOLC: Automatic Differentiation of C/C++. We present...

Maple
 Referenced in 5369 articles
[sw00545]
 The result of over 30 years of cutting...

MATCONT
 Referenced in 442 articles
[sw00551]
 MATCONT: Matlab software for bifurcation study of dynamical...

Mathematica
 Referenced in 6343 articles
[sw00554]
 Almost any workflow involves computing results, and that...

Matlab
 Referenced in 13488 articles
[sw00558]
 MATLAB® is a highlevel language and interactive...

MOMBASA
 Referenced in 5 articles
[sw00588]
 The MOMBASA Software Environment is a toolkit that...

PARI/GP
 Referenced in 636 articles
[sw00680]
 PARI/GP is a widely used Computer Algebra System...

R
 Referenced in 9832 articles
[sw00771]
 R is a language and environment for statistical...

SINGULAR
 Referenced in 1508 articles
[sw00866]
 SINGULAR is a Computer Algebra system (CAS) for...