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  • R
  • Referenced in 9969 articles [sw00771]
  • R is a language and environment for statistical...

  • MIRA
  • Referenced in 1 article [sw02392]
  • MIRA is a multi-pass DNA sequence data...

  • STAR
  • Referenced in 14 articles [sw02515]
  • STAR: ultrafast universal RNA-seq aligner. Motivation: Accurate...

  • Bioconductor
  • Referenced in 319 articles [sw04205]
  • Bioconductor provides tools for the analysis and comprehension...

  • GlobPlot
  • Referenced in 7 articles [sw06213]
  • GlobPlot: exploring protein sequences for globularity and disorder...

  • Biopython
  • Referenced in 20 articles [sw07357]
  • Biopython: freely available Python tools for computational molecular...

  • MAFFT
  • Referenced in 46 articles [sw08304]
  • MAFFT: Multiple alignment program for amino acid or...

  • Soap
  • Referenced in 38 articles [sw08915]
  • SOAP: short oligonucleotide alignment program. We have developed...

  • EMan
  • Referenced in 12 articles [sw09056]
  • EMAN: Semiautomated Software for High-Resolution Single-Particle...

  • PyMOL
  • Referenced in 39 articles [sw09662]
  • PyMOL is a powerful and comprehensive molecular visualization...

  • HMMER
  • Referenced in 19 articles [sw10514]
  • HMMER web server: interactive sequence similarity searching. HMMER...

  • bioperl
  • Referenced in 23 articles [sw10579]
  • The bioperl toolkit: Perl modules for the life...

  • Sweave
  • Referenced in 45 articles [sw10621]
  • Sweave is a tool that allows to embed...

  • EMBOSS
  • Referenced in 35 articles [sw10917]
  • EMBOSS is ”The European Molecular Biology Open Software...

  • SOPRA
  • Referenced in 8 articles [sw12607]
  • SOPRA: scaffolding algorithm for paired reads via statistical...

  • MUSCLE
  • Referenced in 75 articles [sw13193]
  • Muscle: multiple sequence alignment with high accuracy and...

  • GAGE
  • Referenced in 11 articles [sw13528]
  • GAGE: a critical evaluation of genome assemblies and...

  • flowCore
  • Referenced in 12 articles [sw14260]
  • R package flowCore: Basic structures for flow cytometry...