• Camino

  • Referenced in 20 articles [sw15543]
  • Camino Diffusion MRI Toolkit. Camino is an open-source software toolkit for diffusion MRI processing...
  • Phantomas

  • Referenced in 2 articles [sw23302]
  • create realistic phantoms in structural and diffusion MRI. This is intended as a tool ... translational research in the field of diffusion-weighted MRI. The software allows evaluation...
  • Connectome Mapper

  • Referenced in 2 articles [sw19838]
  • Connectome Mapper implements a full diffusion MRI processing pipeline, from raw Diffusion/T1/T2 data to multi...
  • Mrtrix3

  • Referenced in 2 articles [sw38244]
  • investigation of the brain using diffusion MRI. It is implemented using a fast, modular...
  • TractoFlow

  • Referenced in 1 article [sw38243]
  • TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity. Diffusion MRI tractography ... TractoFlow. TractoFlow is fully automatic from raw diffusion weighted images to tractography. The pipeline also...
  • DSI Studio

  • Referenced in 1 article [sw26499]
  • Studio is an open-source diffusion MRI analysis tool that maps brain connections and correlates ... sampling imaging, q-space diffeomorphic reconstruction, diffusion MRI connectometry, and generalized deterministic fiber tracking...
  • dcemriS4

  • Referenced in 4 articles [sw24751]
  • dynamic contrast-enhanced MRI (DEC-MRI) and diffusion-weighted imaging (DWI) data, with emphasis...
  • SpinDoctor

  • Referenced in 1 article [sw35002]
  • SpinDoctor: a Matlab toolbox for diffusion MRI simulation. The complex transverse water proton magnetization subject...
  • hMRI

  • Referenced in 1 article [sw27969]
  • first step towards in vivo histology using MRI (hMRI) and is being extended further ... with existing SPM toolboxes for estimating diffusion MRI parameter maps. From a user’s perspective...
  • Mipy

  • Referenced in 1 article [sw37088]
  • matter is a current challenge in diffusion MRI (dMRI). In particular, multi-compartment (MC)-based ... from single-shell, multi-shell, and multi-diffusion time dMRI data. Mipy follows a ”building...
  • POAS4SPM

  • Referenced in 1 article [sw27971]
  • toolbox for SPM to denoise diffusion MRI data. We present an implementation of a recently...
  • DT-MRI

  • Referenced in 7 articles [sw03048]
  • ultra-high field Diffusion Tensor Magnetic Resonance Imaging (17.6T DT-MRI) and a novel...
  • Disimpy

  • Referenced in 1 article [sw34989]
  • parallel Monte Carlo simulator for generating diffusion-weighted MRI data in Python. Disimpy...
  • Dipy

  • Referenced in 10 articles [sw27511]
  • project for computational neuroanatomy, focusing mainly on diffusion magnetic resonance imaging (dMRI) analysis. It implements ... tracking, clustering, visualization, and statistical analysis of MRI data...
  • Kilbas Saigo

  • Referenced in 2 articles [sw36393]
  • Order Complexity Model of the Diffusion Signal Decay in MRI” by Richard L Magin, Hamid...
  • GRETNA

  • Referenced in 1 article [sw26509]
  • imaging technologies (e.g., EEG/MEG; structural, diffusion and functional MRI) and further characterized by graph theory...
  • BrainSuite

  • Referenced in 5 articles [sw21296]
  • largely automated processing of magnetic resonance images (MRI) of the human brain. The major functionality ... white matter structures, and to analyze diffusion imaging data. BrainSuite also provides several tools...
  • NiftyFit

  • Referenced in 0 articles [sw18918]
  • Arterial Spin Labeled MRI, T1 Relaxometry, T2 relaxometry and Diffusion Weighted imaging, providing command line...
  • Fiberfox

  • Referenced in 2 articles [sw39047]
  • software phantoms. Purpose: Phantom-based validation of diffusion-weighted image processing techniques is an important ... that allows for the introduction of realistic MRI-related effects into the final image...
  • JIST

  • Referenced in 1 article [sw19202]
  • formats, and distributed computation. Herein, we demonstrate MRI image processing with the proposed system ... cohorts, provide a system for fully automated diffusion tensor image analysis, and illustrate...