
PhyloNet
 Referenced in 11 articles
[sw20725]
 fitness to sequence evolution under a maximum parsimony criterion; and (4) evolutionary network reconstruction: reconstructing...

phangorn
 Referenced in 9 articles
[sw08311]
 trees and networks using Maximum Likelihood, Maximum Parsimony, Distance methods & Hadamard conjugation...

RecIDCM3
 Referenced in 6 articles
[sw29614]
 hard optimization problems such as maximum parsimony (MP) and maximum likelihood (ML). Conventional MP heuristics...

SEAVIEW
 Referenced in 4 articles
[sw22985]
 neighbor joining with numerous distance estimates, maximum parsimony, maximum likelihood), and a bootstrap analysis with...

PHYLO_WIN
 Referenced in 4 articles
[sw22986]
 neighbor joining with numerous distance estimates, maximum parsimony, maximum likelihood), and a bootstrap analysis with...

SuperTriplets
 Referenced in 3 articles
[sw29604]
 first inferred and then a maximum parsimony (MP) analysis is performed on it. This binary...

ContaminatedMixt
 Referenced in 18 articles
[sw21014]
 introduce parsimony. The expectationconditional maximization algorithm is adopted to obtain maximum likelihood parameter estimates...

POY
 Referenced in 2 articles
[sw38916]
 defined sequences. In addition to the maximumparsimony optimality criterion supported by POY4, POY5 supports...

CollHaps
 Referenced in 2 articles
[sw35234]
 Heuristic Approach to Haplotype Inference by Parsimony. Haplotype data play a relevant role in several ... such techniques are based on the maximum parsimony principle, which has been justified by both...

PAUP*
 Referenced in 57 articles
[sw07834]
 previous versions of PAUP: Phylogenetic Analysis Using Parsimony has made it the most widely used ... field. With the inclusion of maximum likelihood and distance methods in PAUP...

NGPhylogeny.fr
 Referenced in 1 article
[sw42488]
 large panel of standard methods (distance, parsimony, maximum likelihood and Bayesian). They are integrated...

Mixmod
 Referenced in 37 articles
[sw06991]
 yield different strategies for obtaining a sensible maximum for the likelihood (or completedata likelihood ... Moreover, different information criteria for choosing a parsimonious model (the number of mixture components...

Pylogeny
 Referenced in 1 article
[sw28977]
 phylogenetic trees by Maximum Likelihood (calculated as loglikelihood) and Parsimony. Build confidence sets...

ctsem
 Referenced in 3 articles
[sw15514]
 bias due to varying measurement intervals; parsimonious structures for complex dynamics. The application of such ... this SEM framework allows fullinformation maximumlikelihood estimates for both...

VADER
 Referenced in 5 articles
[sw39061]
 VADER: A Parsimonious RuleBased Model for Sentiment Analysis of Social Media Text. The inherent ... learning oriented techniques relying on Naive Bayes, Maximum Entropy, and Support Vector Machine (SVM) algorithms ... emphasizing sentiment intensity. Interestingly, using our parsimonious rulebased model to assess the sentiment...

Varun
 Referenced in 4 articles
[sw13191]
 allowed to stretch up to some prescribed maximum length. In this paper, a notion ... regions of constant frequency afford us significant parsimony in the generation and testing of candidate...

Quartets MaxCut
 Referenced in 7 articles
[sw29616]
 reconstruction methods are currently limited to a maximum of few dozens of taxa. Supertree methods ... outperforms and outraces the Matrix Representation with Parsimony (MRP) methods that have previously been most...

SuperFine
 Referenced in 3 articles
[sw29605]
 phylogeny estimation where phylogenetic analyses based upon maximum likelihood (ML) are infeasible. In this paper ... sequences. Furthermore, SuperFineboosted matrix representation with parsimony (MRP, the most wellknown supertree method...

longQDA
 Referenced in 1 article
[sw20397]
 QDA.Two multivariate mixed model classes with a parsimonious parametrization are proposed: multivariate random effects models ... first model class. The restricted maximum likelihood estimation of Kronecker product models is accomplished...

GAP
 Referenced in 3190 articles
[sw00320]
 GAP is a system for computational discrete algebra...