• phytools

  • Referenced in 14 articles [sw10003]
  • trait evolution; fitting models of trait evolution with multiple Brownian rates and correlations; visualizing discrete ... character evolution using colors or projections into trait space; identifying the location of a change ... evolution; fitting a model of correlated binary trait evolution; locating the position of a fossil ... trait are sampled from their posterior probability distribution under a model; conducting a multiple...
  • qtlbim

  • Referenced in 7 articles [sw17320]
  • Bayesian multiple QTL mapping. Mapping multiple quantitative trait loci (QTL) is commonly viewed ... been applied to Bayesian multiple QTL mapping. A derivation of the DIC is presented...
  • Qxpak

  • Referenced in 3 articles [sw35126]
  • loci and association analyses. Multiple loci, multiple trait, infinitesimal genetic effects, imprinting, epistasis...
  • FD

  • Referenced in 3 articles [sw04572]
  • Measuring functional diversity (FD) from multiple traits, and other tools for functional ecology...
  • aSPU

  • Referenced in 1 article [sw17060]
  • SPUpath’ (’aSPUpath’) test, ’GEEaSPU’ test for multiple traits - single ’SNP’ (single-nucleotide-polymorphism) association ... generalized estimation equations, ’MTaSPUs’ test for multiple traits - single ’SNP’ association with Genome Wide Association ... association with summary statistics (’aSPUsPath’), (5) Multiple traits-single ’SNP’ association with individual-level data ... GEEaSPU’), (6) Multiple traits- single SNP association with summary statistics (’MTaSPUs’), (7) Multiple traits...
  • moloc

  • Referenced in 1 article [sw31660]
  • Bayesian Framework for Multiple Trait Colocalization from Summary Association Statistics. In this work, we propose ... multiple-trait-coloc (moloc), a Bayesian statistical framework that integrates GWAS summary data with multiple...
  • MTAR

  • Referenced in 1 article [sw28055]
  • genome-wide association test of multiple traits...
  • PPA

  • Referenced in 1 article [sw38242]
  • Parcellation Analysis for Brain Connectomes and Multiple Traits. Our understanding of the structure...
  • WOMBAT

  • Referenced in 1 article [sw07817]
  • wide range of models, comprising numerous traits, multiple fixed and random effects, selected genetic covariance...
  • SNPassoc

  • Referenced in 4 articles [sw07122]
  • either for quantitative or binary traits), and analysis of multiple SNPs (haplotype and epistasis analysis...
  • mirt

  • Referenced in 25 articles [sw13479]
  • response data using unidimensional and multidimensional latent trait models under the Item Response Theory paradigm ... analyses are available for modeling item testlets. Multiple group analysis and mixed effects designs also...
  • ForSim

  • Referenced in 2 articles [sw35346]
  • problems in biology involve complex traits affected by multiple coding or regulatory parts...
  • CMplot

  • Referenced in 0 articles [sw15269]
  • elaborate plot. Moreover, the ever-growing traits measured have necessitated the integration of results from ... style plot, association results from multiple traits can be compared interactively, thereby to reveal both...
  • QTL Express

  • Referenced in 3 articles [sw24835]
  • marker map, trait data and marker genotypes allows mapping of single or multiple...
  • diversitree

  • Referenced in 6 articles [sw26122]
  • Extinction) and its unresolved tree extensions, ’MuSSE’ (Multiple State ’Speciation’ and Extinction), ’QuaSSE’, ’GeoSSE ... include Markov models of discrete and continuous trait evolution and constant rate ’speciation’ and extinction...
  • TreeQTL

  • Referenced in 2 articles [sw34264]
  • active in multiple tissues. In the context of multi-trait association studies, TreeQTL...
  • UNPHASED

  • Referenced in 7 articles [sw20040]
  • Analysis of discrete or quantitative traits; Maximum likelihood treatment of missing genotype data and uncertain ... parent-of-origin; Permutation tests allowing for multiple testing...
  • Belos

  • Referenced in 14 articles [sw12725]
  • implementations: Abstract interfaces to linear algebra using traits mechanisms. This allows the user to leverage ... performing single-vector GMRES simultaneously on multiple right-hand sides, and a single-vector recycled...
  • R/qtl

  • Referenced in 13 articles [sw20451]
  • extensible, interactive environment for mapping quantitative trait loci (QTL) in experimental crosses. It is implemented ... algorithm), Haley-Knott regression, and multiple imputation. All of this may be done...
  • Amesos2

  • Referenced in 11 articles [sw18349]
  • vectors, via an easy-to-extend C++ traits interface. It can also factor matrices whose ... that solve higher-level problems, such as multiple simultaneous linear systems and sequences of related...