• NGS-QC

  • Referenced in 1 article [sw17301]
  • NGS-QC Generator: A Quality Control System for ChIP-Seq and Related Deep Sequencing-Generated ... this problem, we have developed the NGS-QC Generator, a quality control system that infers ... assessing quality descriptors with the NGS-QC Generator; (2) to interpret the generated reports ... database of QC indicators (www.​ngs-qc.​org) for >21,000 publicly available datasets...
  • R

  • Referenced in 8776 articles [sw00771]
  • R is a language and environment for statistical...
  • STAR

  • Referenced in 13 articles [sw02515]
  • STAR: ultrafast universal RNA-seq aligner. Motivation: Accurate...
  • Bioconductor

  • Referenced in 307 articles [sw04205]
  • Bioconductor provides tools for the analysis and comprehension...
  • oligo

  • Referenced in 9 articles [sw06102]
  • (R) A package to analyze oligonucleotide arrays (expression/SNP/tiling/exon...
  • WEKA

  • Referenced in 292 articles [sw06435]
  • WEKA: Waikato Environment for Knowledge Analysis. WEKA is...
  • edgeR

  • Referenced in 49 articles [sw06936]
  • edgeR: a Bioconductor package for differential expression analysis...
  • RankProd

  • Referenced in 6 articles [sw07961]
  • RankProd: Rank Product method for identifying differentially expressed...
  • Soap

  • Referenced in 38 articles [sw08915]
  • SOAP: short oligonucleotide alignment program. We have developed...
  • Sweave

  • Referenced in 44 articles [sw10621]
  • Sweave is a tool that allows to embed...
  • knitr

  • Referenced in 54 articles [sw11224]
  • knitr: A General-Purpose Package for Dynamic Report...
  • snpStats

  • Referenced in 7 articles [sw11396]
  • snpStats: SnpMatrix and XSnpMatrix classes and methods. Bioconductor...
  • C4.5

  • Referenced in 1134 articles [sw12176]
  • C4.5: programs for machine learning. (C4.5 has been...
  • metafor

  • Referenced in 31 articles [sw12291]
  • metafor: Meta-Analysis Package for R. A comprehensive...
  • shiny

  • Referenced in 86 articles [sw13816]
  • R package shiny: Web Application Framework for R...
  • KEGG

  • Referenced in 262 articles [sw13866]
  • KEGG: Kyoto Encyclopedia of Genes and Genomes. KEGG...
  • Biostrings

  • Referenced in 3 articles [sw14509]
  • Bioconductor package. String objects representing biological sequences, and...
  • VCFtools

  • Referenced in 6 articles [sw14582]
  • VCFtools is a program package designed for working...
  • MEME

  • Referenced in 13 articles [sw15711]
  • MEME: discovering and analyzing DNA and protein sequence...
  • BLAT

  • Referenced in 36 articles [sw16891]
  • BLAT — The BLAST-Like Alignment Tool. Analyzing vertebrate...