• Peppy

  • Referenced in 1 article [sw31813]
  • Peppy: Proteogenomic Search Software. Proteogenomic searching is a useful method for identifying novel proteins, annotating ... several unintegrated tools. Furthermore, many proteogenomic efforts have been limited to small genomes, as large ... designed to perform every necessary task of proteogenomic searches quickly, accurately and automatically. The software ... regular desktop computers, opening the doors of proteogenomic searching to a wider audience of proteomics...
  • PGTools

  • Referenced in 1 article [sw31812]
  • PGTools: A Software Suite for Proteogenomic Data Analysis and Visualization. We describe PGTools, an open ... software suite for analysis and visualization of proteogenomic data. PGTools comprises applications, libraries, customized databases ... tools. We experimentally confirm a subset of proteogenomic peptides in human PANC-1 cells ... PGTools should be equally useful for individual proteogenomic investigations as well as international initiatives such...
  • PGMiner

  • Referenced in 1 article [sw31811]
  • PGMiner: Complete proteogenomics workflow; from data acquisition to result visualization. In parallel with the development ... combine proteomics and genomics. For that purpose, proteogenomics data analysis pipelines have been described. Here ... describe a novel proteogenomics workflow which encompasses everything from the acquisition of data to result...
  • iPiG

  • Referenced in 1 article [sw31814]
  • Peptide Spectrum Matches into Genome Browser Visualizations. Proteogenomic approaches have gained increasing popularity, however...
  • PGx

  • Referenced in 1 article [sw31818]
  • present such a tool: PGx, which supports proteogenomic integration of mass spectrometry proteomics data with...
  • KNIME

  • Referenced in 23 articles [sw06790]
  • KNIME - Professional Open-Source Software. KNIME is a...
  • GeneScout

  • Referenced in 7 articles [sw31815]
  • GeneScout: a data mining system for predicting vertebrate...
  • TANDEM

  • Referenced in 9 articles [sw31816]
  • TANDEM: matching proteins with tandem mass spectra. Tandem...
  • MyriMatch

  • Referenced in 2 articles [sw31817]
  • MyriMatch: highly accurate tandem mass spectral peptide identification...