• iSNO-PseAAC

  • Referenced in 39 articles [sw22446]
  • iSNO-PseAAC: predict cysteine S-nitrosylation sites in proteins by incorporating position specific amino acid ... development. Here, a new predictor, called iSNO-PseAAC, was developed for identifying the SNO sites ... general form of pseudo amino acid composition (PseAAC). The predictor was implemented using the conditional ... cross-validation success rate achieved by iSNO-PseAAC in identifying nitrosylated proteins on an independent...
  • PseAAC

  • Referenced in 30 articles [sw16469]
  • PseAAC: A flexible web server for generating various kinds of protein pseudo amino acid composition ... Here, we present a web-server called PseAAC at http://chou.med.harvard.edu/bioinf/PseAA/, by which users...
  • PseAAC-Builder

  • Referenced in 25 articles [sw22404]
  • PseAAC-Builder: a cross-platform stand-alone program for generating various special Chou’s pseudo ... public is the web server PseAAC (http://www.csbio.sjtu.edu.cn/bioinf/PseAAC), which has some limitations in dealing ... cross-platform stand-alone software program, called PseAAC-Builder (http://www.pseb.sf.net), which can be used ... flexible way. It is anticipated that PseAAC-Builder may become a useful tool for studying...
  • propy

  • Referenced in 27 articles [sw22402]
  • generate various modes of Chou’s PseAAC. SUMMARY: Sequence-derived structural and physiochemical features have ... types of pseudo amino acid composition (PseAAC) descriptors. These features could be generally regarded ... different Chou’s PseAAC modes. In addition, it can also easily compute the previous descriptors...
  • pLoc-mEuk

  • Referenced in 30 articles [sw24440]
  • extracting the key GO information into general PseAAC. Many efforts have been made in predicting ... Gene Ontology) information into the general PseAAC (Pseudo Amino Acid Composition). Rigorous cross-validations...
  • pLoc-mPlant

  • Referenced in 27 articles [sw25191]
  • incorporating the optimal GO information into general PseAAC. One of the fundamental goals in cellular ... Ontology) information into the Chou’s general PseAAC (Pseudo Amino Acid Composition). Rigorous cross-validation...
  • iMethyl-PseAAC

  • Referenced in 21 articles [sw22443]
  • iMethyl-PseAAC: Identification of Protein Methylation Sites via a Pseudo Amino Acid Composition Approach. Before ... proposed a new predictor, called iMethyl-PseAAC. In the prediction system, a peptide sample ... test and independent dataset test that iMethyl-PseAAC was superior to any of the existing...
  • iPPI-Esml

  • Referenced in 26 articles [sw22413]
  • their physicochemical properties and wavelet transforms into PseAAC. A cell contains thousands of proteins. Many ... information into the general form of PseAAC (pseudo amino acid composition): (1) the physicochemical properties...
  • GPCR-2L

  • Referenced in 22 articles [sw22409]
  • different modes of pseudo-amino acid composition (PseAAC): the functional domain PseAAC ... frequency Fourier spectrum PseAAC. The new predictor is called GPCR-2L, where ”2L” means that...
  • iAMP-2L

  • Referenced in 23 articles [sw22416]
  • based on the pseudo amino acid composition (PseAAC) and fuzzy K-nearest neighbor (FKNN) algorithm ... where the components of PseAAC were featured by incorporating five physicochemical properties. The novel classifier...
  • pLoc-mVirus

  • Referenced in 23 articles [sw24439]
  • incorporating the optimal GO information into general PseAAC. Knowledge of subcellular locations of proteins ... Gene Ontology) information into the general PseAAC (Pseudo Amino Acid Composition). Rigorous cross-validation...
  • pSuc-Lys

  • Referenced in 31 articles [sw16643]
  • predict lysine succinylation sites in proteins with PseAAC and ensemble random forest approach. Being...
  • iRSpot-TNCPseAAC

  • Referenced in 31 articles [sw22412]
  • pseudo amino acid components (PseAAC) of the protein translated from the DNA sample according...
  • PseAAC-General

  • Referenced in 16 articles [sw22430]
  • PseAAC-General: fast building various modes of general form of Chou’s pseudo-amino acid ... general form pseudo-amino acid composition (PseAAC) has been widely used to represent protein sequences ... functional attributes. We developed the program PseAAC-General to generate various different modes of Chou ... general PseAAC, such as the gene ontology mode, the functional domain mode, and the sequential...
  • iPreny-PseAAC

  • Referenced in 16 articles [sw24533]
  • iPreny-PseAAC: Identify C-terminal Cysteine Prenylation Sites in Proteins by Incorporating Two Tiers ... Sequence Couplings into PseAAC. CONCLUSION: It is anticipated that the iPreny-PseAAC predictor holds very...
  • iHyd-PseAAC

  • Referenced in 16 articles [sw27675]
  • iHyd-PseAAC: Predicting Hydroxyproline and Hydroxylysine in Proteins by Incorporating Dipeptide Position-Specific Propensity into ... this, a new predictor called “iHyd-PseAAC” (identify hydroxylation by pseudo amino acid composition ... user-friendly web-server for iHyd-PseAAC is accessible at http://app.aporc.org/iHyd-PseAAC/. Furthermore...
  • pLoc-mHum

  • Referenced in 20 articles [sw27661]
  • multi-location human proteins via general PseAAC to winnow out the crucial GO information. Motivation ... Gene Ontology) information into the general PseAAC (Pseudo Amino Acid Composition). Rigorous cross-validations...
  • iPTM-mLys

  • Referenced in 26 articles [sw23948]
  • sequence-coupled effects into the general PseAAC, and by fusing an array of basic random...
  • iSNO-AAPair

  • Referenced in 24 articles [sw22447]
  • AAPair: incorporating amino acid pairwise coupling into PseAAC for predicting cysteine S-nitrosylation sites...
  • iPhos-PseEvo

  • Referenced in 17 articles [sw23953]
  • Proteins by Incorporating Evolutionary Information into General PseAAC via Grey System Theory. Protein phosphorylation plays ... into the general pseudo amino acid composition (PseAAC) via the grey system theory, (2) balancing...