• CellProfiler

  • Referenced in 17 articles [sw18751]
  • CellProfiler can address a variety of biological questions quantitatively, including standard assays (for example, cell...
  • LAS

  • Referenced in 21 articles [sw17180]
  • sets. The validation study examines quantitative properties of biclusters, biological and clinical assessments using auxiliary...
  • popbio

  • Referenced in 4 articles [sw23539]
  • Population Models by Caswell (2001) and Quantitative Conservation Biology by Morris and Doak...
  • aRxiv

  • Referenced in 1 article [sw19335]
  • preprints for computer science, mathematics, physics, quantitative biology, quantitative finance, and statistics...
  • QSSPN

  • Referenced in 1 article [sw30010]
  • genotype–phenotype relationships. Despite advances in quantitative biology, full parameterization of whole-cell models...
  • Lynx

  • Referenced in 10 articles [sw13643]
  • biological structure of the solution, and energetic constraints, which encode quantitative requirements that the solution...
  • SynBioSS

  • Referenced in 3 articles [sw20854]
  • generation, storing, retrieval and quantitative simulation of synthetic biological networks. SynBioSS facilitates computational synthetic biology...
  • MSEA

  • Referenced in 2 articles [sw16938]
  • based tool to identify biologically meaningful patterns in quantitative metabolomic data. Gene set enrichment analysis ... mammalian metabolite concentration changes in a biologically meaningful context. Key to the development of MSEA ... analysis (ORA), single sample profiling (SSP) and quantitative enrichment analysis (QEA). ORA requires only...
  • pyPESTO

  • Referenced in 3 articles [sw34667]
  • optimal scaling approach. Quantitative dynamical models facilitate the understanding of biological processes and the prediction ... inferred from experimental data. For quantitative experimental data, there are several methods and software tools...
  • MOLNs

  • Referenced in 2 articles [sw16724]
  • effectively limiting the type of biological questions addressed by quantitative modeling. In this paper...
  • Facile

  • Referenced in 1 article [sw28767]
  • Background: A goal of systems biology is the quantitative modelling of biochemical networks ... analysing the dynamics of a systems biology model. Facile implements the law of mass action...
  • MMG

  • Referenced in 4 articles [sw29328]
  • model to identify differentially expressed submodules of biological networks and pathways. The method can easily ... results on quantitative high-throughput proteomic data leads to the identification of biologically significant subnetworks...
  • anNET

  • Referenced in 2 articles [sw35331]
  • labs working on quantitative metabolomics will provide the systems biology and metabolic engineering communities with...
  • SQUAD

  • Referenced in 5 articles [sw29353]
  • biological systems. This information, however, has proven to be insufficient for the construction of quantitative ... continuous external signals, which are pervasive in biological phenomena. A brief description and code...
  • booleannet

  • Referenced in 8 articles [sw22019]
  • they are eminently suited at mapping biological observations and hypotheses into a mathematical formalism ... very accessible even without a background in quantitative sciences, yet it allows life scientists...
  • VennMaster

  • Referenced in 3 articles [sw35321]
  • with semi-quantitative size information in a single diagram to support biological hypothesis formulation...
  • Hy3S

  • Referenced in 5 articles [sw23355]
  • interested in the computational design of interesting biological devices, especially ones that rely on regulated ... expression to produce useful behavior. By combining quantitatively predictive simulations and design algorithms, one will...
  • Simbio

  • Referenced in 2 articles [sw09096]
  • differential equations. In the field of medical biology, extensive research results regarding molecular and cellular ... these complex cell functions cannot be explained quantitatively. Due to this ... fact, a quantitative dynamic model that can integrate experimental data and reproduce biological mechanisms...
  • BioMagResBank

  • Referenced in 5 articles [sw40765]
  • nuclear magnetic resonance (NMR) spectroscopic studies of biological molecules. BMRB is a partner ... consists of four main data depositories: (i) quantitative NMR spectral parameters for proteins, peptides, nucleic ... spectral resonances and determine the structures of biological macromolecules and (iv) a database...
  • ShapePheno

  • Referenced in 1 article [sw14414]
  • deformation phenotypes from biological images, making them available as quantitative traits for downstream analysis...