• ClustalW

  • Referenced in 136 articles [sw12016]
  • CLUSTAL W: improving the sensitivity of progressive multiple...
  • Mfold

  • Referenced in 41 articles [sw12672]
  • Mfold web server for nucleic acid folding and...
  • FR3D

  • Referenced in 5 articles [sw13838]
  • FR3D stands for “Find RNA 3D” and is...
  • KEGG

  • Referenced in 265 articles [sw13866]
  • KEGG: Kyoto Encyclopedia of Genes and Genomes. KEGG...
  • VARNA

  • Referenced in 5 articles [sw16406]
  • VARNA: Interactive drawing and editing of the RNA...
  • CompaRNA

  • Referenced in 2 articles [sw16474]
  • CompaRNA: a server for continuous benchmarking of automated...
  • OBSTRUCT

  • Referenced in 3 articles [sw16886]
  • OBSTRUCT: a program to obtain largest cliques from...
  • DNdisorder

  • Referenced in 2 articles [sw16907]
  • DNdisorder: predicting protein disorder using boosting and deep...
  • Galaxy

  • Referenced in 12 articles [sw16927]
  • Galaxy: A platform for interactive large-scale genome...
  • FastQC

  • Referenced in 8 articles [sw16946]
  • FastQC: A quality control tool for high throughput...
  • Infernal

  • Referenced in 12 articles [sw17000]
  • Infernal 1.1: 100-fold faster RNA homology searches...
  • CONFOLD

  • Referenced in 1 article [sw17008]
  • CONFOLD: Residue-residue contact-guided ab initio protein...
  • Oases

  • Referenced in 3 articles [sw17027]
  • Oases: robust de novo RNA-seq assembly across...
  • SOAPdenovo

  • Referenced in 8 articles [sw17028]
  • SOAP: Short Oligonucleotide Analysis Package. SOAPdenovo is a...
  • RNAmute

  • Referenced in 2 articles [sw17059]
  • The RNAmute web server for the mutational analysis...
  • RNAexinv

  • Referenced in 2 articles [sw17114]
  • RNAexinv: an extended inverse RNA folding from shape...
  • RNAfbinv

  • Referenced in 1 article [sw17115]
  • RNAfbinv: an interactive Java application for fragment-based...
  • RNAalifold

  • Referenced in 3 articles [sw17116]
  • RNAalifold: improved consensus structure prediction for RNA alignments...
  • CONTRAfold

  • Referenced in 8 articles [sw17117]
  • For several decades, free energy minimization methods have...