
SNVMix
 Referenced in 4 articles
[sw29569]
 evaluated these approaches on 16 ovarian cancer RNASeq datasets with matched genotyping arrays...

PROPER
 Referenced in 2 articles
[sw17314]
 package PROPER: PROspective Power Evaluation for RNAseq. This package provide simulation based methods for evaluating...

compcodeR
 Referenced in 1 article
[sw23834]
 expression methods for RNAseq data. Bioconductor: RNAseq data simulation, differential expression analysis and performance ... different methods for differential expression analysis of RNAseq data. It also contains functions for simulating...

RNASeqR
 Referenced in 1 article
[sw28858]
 After running functions in order, a basic RNASeq analysis would be done easily...

R
 Referenced in 8873 articles
[sw00771]
 R is a language and environment for statistical...

Snow
 Referenced in 20 articles
[sw01447]
 Snow: A parallel computing framework for the R...

STAR
 Referenced in 13 articles
[sw02515]
 STAR: ultrafast universal RNAseq aligner. Motivation: Accurate...

Bioconductor
 Referenced in 308 articles
[sw04205]
 Bioconductor provides tools for the analysis and comprehension...

faraway
 Referenced in 23 articles
[sw04357]
 Extending the linear model with R. Generalized linear...

Rfam
 Referenced in 33 articles
[sw04637]
 The Rfam database is a collection of RNA...

edgeR
 Referenced in 49 articles
[sw06936]
 edgeR: a Bioconductor package for differential expression analysis...

RNAshapes
 Referenced in 7 articles
[sw07960]
 RNAshapes: an integrated RNA analysis package based on...

onechannelgui
 Referenced in 3 articles
[sw07962]
 oneChannelGUI: A graphical interface designed to facilitate analysis...

DEGseq
 Referenced in 11 articles
[sw07998]
 DEGseq: an R package for identifying differentially expressed...

RINLA
 Referenced in 69 articles
[sw08014]
 Extending integrated nested Laplace approximation to a class...

pegas
 Referenced in 4 articles
[sw08307]
 pegas: Population and Evolutionary Genetics Analysis System. pegas...

affy
 Referenced in 35 articles
[sw08345]
 An R Package for Analyses of Affymetrix Oligonucleotide...

Rcpp
 Referenced in 220 articles
[sw08385]
 Rcpp: Seamless R and C++ Integration. The Rcpp...

BaySeq
 Referenced in 17 articles
[sw10343]
 baySeq: Empirical Bayesian analysis of patterns of differential...

DEseq
 Referenced in 53 articles
[sw10344]
 DESeq: Differential gene expression analysis based on the...