• SERB

  • Referenced in 4 articles [sw01078]
  • specifically to meet the needs of research biologists. A biological system is typically considered ... presented. Then SERB (the Simulation Environment for Research Biologists) is described. SERB uses Flavor objects ... ideal language for implementing modeling and simulation software for this domain...
  • sbtoolbox

  • Referenced in 18 articles [sw07391]
  • Toolbox for MATLAB: a computational platform for research in systems biology. We present a Systems ... toolbox offers systems biologists an open and extensible environment, in which to explore ideas, prototype ... build applications for the analysis and simulation of biological and biochemical systems. Additionally...
  • Virtual Cell

  • Referenced in 9 articles [sw22589]
  • cellular structures. Computational modeling is familiar to researchers in fields such as molecular structure, neurobiology ... address problems of interest to cell biologists, relatively few software development efforts have been directed ... computational environment designed for cell biologists as well as for mathematical biologists and bioengineers ... cell biological models and the generation of simulations from them. The system enables the formulation...
  • VirtualLeaf

  • Referenced in 4 articles [sw28766]
  • understand intuitively. Mathematical and computer modeling allows researchers to design new hypotheses and produce experimentally ... modeling poorly accessible to experimental biologists. Problem-solving environments provide biologically intuitive in silico objects ... regulation networks”) required for setting up a simulation and present those to the user ... that provide useful abstractions for building biological simulations of developmental processes. We present a step...
  • DYNAMO

  • Referenced in 264 articles [sw01227]
  • DYNAMO (DYNAmic MOdels) was a simulation language and...