• UniProt

  • Referenced in 136 articles [sw21320]
  • UniProt: a hub for protein information. UniProt is an important collection of protein sequences ... sequences has prompted an extension of UniProt accession number space from 6 to 10 characters ... annotation score for all entries in UniProt to represent the relative amount of knowledge known ... most informative for comparative analysis. All UniProt data is provided freely and is available...
  • WoLF PSORT

  • Referenced in 11 articles [sw27721]
  • query to similar proteins and links to UniProt and Gene Ontology are provided. Taken together...
  • Bio2RDF

  • Referenced in 10 articles [sw23946]
  • public bioinformatics data providers: GO, NCBI, UniProt, KEGG, PDB and many others. The average link...
  • NR-2L

  • Referenced in 9 articles [sw26879]
  • benchmark datasets derived from the NucleaRDB and UniProt with low redundancy that the overall success...
  • HMDB

  • Referenced in 9 articles [sw28995]
  • other databases (KEGG, PubChem, MetaCyc, ChEBI, PDB, UniProt, and GenBank) and a variety of structure...
  • OrthoDB

  • Referenced in 5 articles [sw22979]
  • most extensive integration of functional annotations from UniProt, InterPro, GO, OMIM, model organism phenotypes...
  • Quokka

  • Referenced in 5 articles [sw27666]
  • test datasets, curated from the Phospho.ELM and UniProt databases, respectively. The independent test demonstrates that...
  • PlantTFDB

  • Referenced in 4 articles [sw17023]
  • cross-linsk to various databases such as UniProt, RefSeq, STRING and Entrez Gene. By inferring...
  • biomaRt

  • Referenced in 3 articles [sw17280]
  • Examples of BioMart databases are Ensembl, COSMIC, Uniprot, HGNC, Gramene, Wormbase and dbSNP mapped...
  • EVEREST

  • Referenced in 3 articles [sw22975]
  • current EVEREST database was constructed by scanning UniProt 8.1 and all PDB sequences (total over...
  • Gene3D

  • Referenced in 2 articles [sw22981]
  • addition of over 100 genomes and the UniProt sequence database, domain data from Pfam, metabolic...
  • GeneReporter

  • Referenced in 2 articles [sw24071]
  • extraction of query words from UniProt entries of homologous sequences. Data on protein families, domains...
  • yOWL

  • Referenced in 2 articles [sw24081]
  • obtained from the Saccharomyces Genome Database and UniProt, we discuss the challenges encountered during...
  • SMPDB

  • Referenced in 2 articles [sw29378]
  • complex or enzyme complex is hyperlinked to UniProt. All SMPDB pathways are accompanied with detailed...
  • SNPeffect

  • Referenced in 2 articles [sw30038]
  • contains all known human protein variants from UniProt, but users can now also submit custom...
  • iProLINK

  • Referenced in 1 article [sw01469]
  • effort on the curation of the UniProt protein sequence database, the goal of iProLINK...
  • HPMV

  • Referenced in 1 article [sw17017]
  • input, HPMV accepts protein mutations — as UniProt accessions with mutations (e.g. HGVS nomenclature), genome coordinates...
  • HAMAP

  • Referenced in 1 article [sw22977]
  • part of the UniRule pipeline of UniProt, providing annotation for millions of unreviewed sequences...
  • MOPED

  • Referenced in 1 article [sw29370]
  • protein and pathway databases, including GeneCards, Entrez, UniProt, KEGG and Reactome. The current version...
  • VarfromPDB

  • Referenced in 0 articles [sw16516]
  • ClinVar <http://www.ncbi.nlm.nih.gov/clinvar>, and UniProt (Universal Protein Resource, <http://www.uniprot.org ... human variations and phenotypes, with supporting evidence. UniProt focuses on amino acid altering variants imported ... human polymorphisms and disease mutations in the UniProt are manually curated from UniProtKB/Swiss-Prot. Additionally, PubMed...