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  • MLGO
  • Referenced in 2 articles [sw29621]
  • MLGO: phylogeny reconstruction and ancestral inference from gene-order data. Background: The rapid accumulation ... tool for the reconstruction of phylogeny and/or ancestral genomes from gene-order data. MLGO...

  • phytools
  • Referenced in 14 articles [sw10003]
  • continuous character data with ML; plotting lineage accumulation through time, including across multiple trees (such ... taxa; reducing a phylogeny to its backbone tree; dropping tips or adding tips to special...

  • QuartetS
  • Referenced in 2 articles [sw34206]
  • detection by leveraging evolutionary evidence in the accumulated sequenced genomes. Here, we report a novel ... from orthologous genes. We used function- and phylogeny-based metrics to perform a large-scale...

  • Mathematica
  • Referenced in 6355 articles [sw00554]
  • Almost any workflow involves computing results, and that...

  • Matlab
  • Referenced in 13544 articles [sw00558]
  • MATLAB® is a high-level language and interactive...

  • R
  • Referenced in 9969 articles [sw00771]
  • R is a language and environment for statistical...

  • CODA
  • Referenced in 355 articles [sw04290]
  • R package coda: Output analysis and diagnostics for...

  • WinBUGS
  • Referenced in 771 articles [sw04492]
  • WinBUGS is part of the BUGS project, which...

  • JAGS
  • Referenced in 247 articles [sw08040]
  • JAGS is Just Another Gibbs Sampler. It is...

  • GPCR-2L
  • Referenced in 22 articles [sw22409]
  • GPCR-2L: predicting G protein-coupled receptors and...

  • SubChlo
  • Referenced in 11 articles [sw22431]
  • SubChlo: predicting protein subchloroplast locations with pseudo-amino...

  • SecretP
  • Referenced in 14 articles [sw22470]
  • SecretP: identifying bacterial secreted proteins by fusing new...

  • GitHub
  • Referenced in 2766 articles [sw23170]
  • GitHub (originally known as Logical Awesome LLC)[3...

  • Mtreemix
  • Referenced in 4 articles [sw23824]
  • Mtreemix: a software package for learning and using...

  • GASTS
  • Referenced in 5 articles [sw29624]
  • GASTS: parsimony scoring under rearrangements. The accumulation of...