• MLGO

  • Referenced in 2 articles [sw29621]
  • MLGO: phylogeny reconstruction and ancestral inference from gene-order data. Background: The rapid accumulation ... tool for the reconstruction of phylogeny and/or ancestral genomes from gene-order data. MLGO...
  • phytools

  • Referenced in 14 articles [sw10003]
  • continuous character data with ML; plotting lineage accumulation through time, including across multiple trees (such ... taxa; reducing a phylogeny to its backbone tree; dropping tips or adding tips to special...
  • QuartetS

  • Referenced in 2 articles [sw34206]
  • detection by leveraging evolutionary evidence in the accumulated sequenced genomes. Here, we report a novel ... from orthologous genes. We used function- and phylogeny-based metrics to perform a large-scale...
  • Mathematica

  • Referenced in 6355 articles [sw00554]
  • Almost any workflow involves computing results, and that...
  • Matlab

  • Referenced in 13544 articles [sw00558]
  • MATLAB® is a high-level language and interactive...
  • R

  • Referenced in 9969 articles [sw00771]
  • R is a language and environment for statistical...
  • CODA

  • Referenced in 355 articles [sw04290]
  • R package coda: Output analysis and diagnostics for...
  • WinBUGS

  • Referenced in 771 articles [sw04492]
  • WinBUGS is part of the BUGS project, which...
  • JAGS

  • Referenced in 247 articles [sw08040]
  • JAGS is Just Another Gibbs Sampler. It is...
  • GPCR-2L

  • Referenced in 22 articles [sw22409]
  • GPCR-2L: predicting G protein-coupled receptors and...
  • SubChlo

  • Referenced in 11 articles [sw22431]
  • SubChlo: predicting protein subchloroplast locations with pseudo-amino...
  • SecretP

  • Referenced in 14 articles [sw22470]
  • SecretP: identifying bacterial secreted proteins by fusing new...
  • GitHub

  • Referenced in 2766 articles [sw23170]
  • GitHub (originally known as Logical Awesome LLC)[3...
  • Mtreemix

  • Referenced in 4 articles [sw23824]
  • Mtreemix: a software package for learning and using...
  • GASTS

  • Referenced in 5 articles [sw29624]
  • GASTS: parsimony scoring under rearrangements. The accumulation of...