
PReMiuM
 Referenced in 13 articles
[sw14746]
 also included. Additionally, predictions may be made for the response, and missing values ... functions for postprocessing of the output are also provided. In addition to fitting mixtures...

rsvd
 Referenced in 7 articles
[sw16104]
 value decomposition to compute the most significant principal components. This package also includes a function ... randomized) robust principal component analysis (RPCA). In addition several plot functions are provided...

NLPL1
 Referenced in 1 article
[sw25050]
 absolute function values. In addition there may be any set of equality or inequality constraints ... assumed that all individual problem functions are continuously differentiable. Numerical Method: The problem is transformed...

frailtypack
 Referenced in 43 articles
[sw06070]
 penalized likelihood estimation on the hazard function but also a parametric estimation. 1) A shared ... using an approximated crossvalidation procedure. 2) Additive frailty models for proportional hazard models with ... event for clustered data or not. Prediction values are available. Left truncated (not for Joint...

runjags
 Referenced in 18 articles
[sw10688]
 runjags: Interface utilities, parallel computing methods and additional distributions for MCMC models in JAGS. This ... Just Another Gibbs Sampler (JAGS). The primary functions facilitate running parallel JAGS models for multiple ... model files with data and initial values lists. Model fitting can be done locally ... other user specified functions. A JAGS extension module implementing additional distributions for JAGS models (including...

corpor
 Referenced in 22 articles
[sw09381]
 definite and wellconditioned covariance matrix. In addition to inferring the covariance matrix the package ... shrinkage correlation matrix. Furthermore, functions are available for fast singular value decomposition, for computing...

BioBayes
 Referenced in 26 articles
[sw08082]
 degree of uncertainty about the values of kinetic parameters, about the general structure ... differential equations. The package is extensible allowing additional modules to be included by developers. There ... other such packages available which provide this functionality...

UCODE
 Referenced in 5 articles
[sw25638]
 defined flexibly with userspecified functions. Observations to be matched in the regression ... equivalent value can be produced, thus simulated equivalent values are calculated using values that appear ... manipulated with additive and multiplicative functions, if necessary. Prior, or direct, information on estimated parameters ... weighted leastsquares objective function with respect to the parameter values using a modified Gauss...

weightedHypervolume
 Referenced in 32 articles
[sw31878]
 hypervolume indicators for different weight distribution functions. Using the hypervolume of the dominated portion ... measure yields a strictly better quality value for the former than for the latter ... that achieves the maximally possible quality value for a particular problem contains all Paretooptimal ... extremes of the second objective plus one additional extreme point for the first objective, Focus...

deTestSet
 Referenced in 22 articles
[sw06062]
 equations. In addition it includes 6 new codes to solve initial value problems ... derived from the test set for initial value problem solvers available at url{http://www.dm.uniba.it ... common interface to the defining problem functions. Many of these facilities are now available...

GeNIe
 Referenced in 7 articles
[sw13964]
 functions, NoisyOR and NoisyAND gates, value of information, and sensitivity analysis. In addition...

EMMIXcskew
 Referenced in 6 articles
[sw16159]
 functions to fit the FMCFUST model, including procedures for generating different initial values. Additional...

PICL
 Referenced in 15 articles
[sw11667]
 Correct execution is also a function of the parameter values passed to the routines ... inform the user when a parameter value is not legal on a particular machine. Programs ... simple userdefined events if a few additional statements are added to the source code...

CCA
 Referenced in 16 articles
[sw09506]
 same experimental units. The cancor() function in R (R Development Core Team 2007) performs ... required to provide the user with additional tools to facilitate the interpretation of the results ... enable the user to handle missing values. The CCA package also includes a regularized version...

corpcor
 Referenced in 14 articles
[sw10199]
 definite and wellconditioned covariance matrix. In addition to inferring the covariance matrix the package ... shrinkage correlation matrix. Furthermore, functions are available for fast singular value decomposition, for computing...

PROFEAT
 Referenced in 14 articles
[sw16924]
 predicting proteins and peptides of different structural, functional and interaction profiles. PROFEAT (Protein Features ... that include 51 descriptors and 1447 descriptor values. The computed features include amino acid composition ... various structural and physicochemical properties. In addition, it can also compute previous autocorrelations descriptors based ... published works for predicting proteins of functional classes, protein–protein interactions and MHCbinding peptides...

CVODES
 Referenced in 35 articles
[sw04946]
 stiff and nonstiff ODE systems (initial value problem) given in explicit form ... model parameters and the number of functional outputs, one of two sensitivity methods is more ... each parameter in turn to yield an additional system of the same size...

rksuite_90
 Referenced in 6 articles
[sw00809]
 present Fortran 90 software for the initial value problem in ordinary differential equations, including ... structures of variables and to provide additional functionality. A novel feature of this software...

BranchCuts
 Referenced in 5 articles
[sw24938]
 Typical examples include the addition formulae for inverse trigonometric functions. Understanding these cuts is essential ... working with the singlevalued counterparts, the common approach to encoding multivalued functions...

miceadds
 Referenced in 2 articles
[sw15857]
 addition to some utility functions, main features include plausible value imputation, multilevel imputation functions, imputation...