• SoDA2

  • Referenced in 3 articles [sw23149]
  • essential in the study of the antibody repertoires produced in response to infection...
  • IgRepertoireConstructor

  • Referenced in 1 article [sw23144]
  • IgRepertoireConstructor: a novel algorithm for antibody repertoire construction and immunoproteogenomics analysis. The analysis of concentrations ... circulating antibodies in serum (antibody repertoire) is a fundamental, yet poorly studied, problem in immunoinformatics ... current approaches to the analysis of antibody repertoires [next generation sequencing (NGS) and mass spectrometry ... mass spectra to validate the constructed antibody repertoires. Availability and implementation: IgRepertoireConstructor is open source...
  • R

  • Referenced in 10196 articles [sw00771]
  • R is a language and environment for statistical...
  • Bioconductor

  • Referenced in 328 articles [sw04205]
  • Bioconductor provides tools for the analysis and comprehension...
  • PLINK

  • Referenced in 68 articles [sw04581]
  • PLINK is a free, open-source whole genome...
  • Rfam

  • Referenced in 33 articles [sw04637]
  • The Rfam database is a collection of RNA...
  • Rnamotif

  • Referenced in 10 articles [sw04638]
  • The rnamotif program [1] searches a database for...
  • edgeR

  • Referenced in 53 articles [sw06936]
  • edgeR: a Bioconductor package for differential expression analysis...
  • igraph

  • Referenced in 215 articles [sw07066]
  • igraph is a software package for complex network...
  • MCMCglmm

  • Referenced in 35 articles [sw08302]
  • R package MCMCglmm: MCMC Generalised Linear Mixed Models...
  • MAFFT

  • Referenced in 48 articles [sw08304]
  • MAFFT: Multiple alignment program for amino acid or...
  • minet

  • Referenced in 8 articles [sw08432]
  • minet: A R/Bioconductor Package for Inferring Large Transcriptional...
  • TASSEL

  • Referenced in 5 articles [sw11446]
  • TASSEL: Software for association mapping of complex traits...
  • SynTReN

  • Referenced in 17 articles [sw12311]
  • SynTReN: a generator of synthetic gene expression data...
  • SCARPA

  • Referenced in 7 articles [sw12608]
  • SCARPA: scaffolding reads with practical algorithms. Motivation: Scaffolding...
  • UNAFold

  • Referenced in 8 articles [sw12671]
  • UNAFold: software for nucleic acid folding and hybridization...
  • QNet

  • Referenced in 11 articles [sw13845]
  • QNet: A Tool for Querying Protein Interaction Networks...
  • KEGG

  • Referenced in 281 articles [sw13866]
  • KEGG: Kyoto Encyclopedia of Genes and Genomes. KEGG...