• DEseq

  • Referenced in 60 articles [sw10344]
  • count data from high-throughput sequencing assays and test for differential expression based...
  • DESeq2

  • Referenced in 27 articles [sw41938]
  • count data from high-throughput sequencing assays and test for differential expression based...
  • CellProfiler

  • Referenced in 17 articles [sw18751]
  • variety of biological questions quantitatively, including standard assays (for example, cell count, size, per-cell ... protein levels) and complex morphological assays (for example, cell/organelle shape or subcellular patterns...
  • tlmec

  • Referenced in 15 articles [sw11119]
  • limits of quantification of the assay used. Although normal distributions are commonly assumed for random...
  • Ebimage

  • Referenced in 12 articles [sw18998]
  • context of microscopy-based cellular assays, EBImage offers tools to segment cells and extract quantitative...
  • TM4

  • Referenced in 12 articles [sw26846]
  • improved laboratory protocols (11) allow for assays of tremendous complexity and scope. Scientists seeking...
  • Affycomp III

  • Referenced in 11 articles [sw14610]
  • several probes to assay each targeted transcript. This is a bonanza for the statistical geneticist...
  • AgentCell

  • Referenced in 6 articles [sw35544]
  • AgentCell: a digital single-cell assay for bacterial chemotaxis. Motivation: In recent years, single-cell ... move in a 3D environment. Digital chemotaxis assays reproduce experimental data obtained from both single...
  • SECT

  • Referenced in 8 articles [sw38960]
  • existing tumor shape quantifications and common molecular assays. Specifically, we demonstrate that SECT features alone...
  • CLIP

  • Referenced in 7 articles [sw14373]
  • matching algorithm. Experiments with HIV assay data demonstrate the effectiveness and the efficiency of this...
  • mratios

  • Referenced in 6 articles [sw14522]
  • multiple) slope ratio and parallel line assays can be carried out. Moreover, it is possible...
  • Minfi

  • Referenced in 6 articles [sw23478]
  • 450k’ array) provides a high-throughput assay to quantify DNA methylation (DNAm...
  • ACSSCode

  • Referenced in 6 articles [sw26233]
  • observable. It is applicable to rodent tumorigenicity assays that have either a single terminal sacrifice...
  • rpubchem

  • Referenced in 3 articles [sw26084]
  • PubChem Collection. Access PubChem data (compounds, substance, assays) using R. Structural information is provided ... precalculated data stored by PubChem. Bio-assay data can be accessed to obtain descriptions ... also possible to search for assay ID’s by keyword...
  • IMP

  • Referenced in 5 articles [sw07913]
  • data, including hybridization experiments, STS-based PCR assays, genetic linkage mapping, cDNA localization, and FISH...
  • HTqPCR

  • Referenced in 3 articles [sw29359]
  • microarray hybridization data and clinical diagnostic assays. Although numerous statistical tools are available ... amenable to the tandem analysis of multiple assays. This is problematic when an experiment involves...
  • MuPlex

  • Referenced in 2 articles [sw30947]
  • MuPlex: multi-objective multiplex PCR assay design. We have developed a web-enabled system called ... researchers in the design of multiplex PCR assays. Multiplex PCR is a key technology ... However, the design of a multiplex PCR assays is computationally challenging because it involves tradeoffs ... MuPlex designs a set of multiplex PCR assays designed to cover as many...
  • miRTarBase

  • Referenced in 4 articles [sw29360]
  • articles, 7439 strongly validated MTIs (using reporter assays or western blots) and 348 007 MTIs...
  • HPeak

  • Referenced in 4 articles [sw29576]
  • Additionally, in comparison to the ChIP-chip assay, ChIP-Seq provides higher resolution along with...
  • GenoSNP

  • Referenced in 4 articles [sw34351]
  • algorithm for the Illumina Infinium SNP genotyping assay that is entirely within-sample and does...