• CMAR

  • Referenced in 49 articles [sw28406]
  • classification based on multiple class-association rules. Previous studies propose that associative classification has high ... /sup 2/ analysis using multiple strong association rules. Our extensive experiments on 26 databases from ... with CBA and C4.5. Moreover, our performance study shows that the method is highly efficient ... scalable in comparison with other reported associative classification methods...
  • pi-MASS

  • Referenced in 16 articles [sw17249]
  • variable selection regression for genome-wide association studies and other large-scale problems We consider ... Regression, or BVSR, to genome-wide association studies and similar large-scale regression problems. Currently ... typical genome-wide association studies measure hundreds of thousands, or millions, of genetic variants (SNPs ... regression. Characteristic features of genome-wide association studies include the following: (i) a focus primarily...
  • ranger

  • Referenced in 29 articles [sw14498]
  • scale of a genome-wide association study...
  • CLOSET

  • Referenced in 50 articles [sw26986]
  • frequent itemsets and association rules. Recent studies have proposed an interesting alternative: mining frequent closed ... rules, which has the same power as association mining but substantially reduces the number ... scalable mining in large databases. Our performance study shows that CLOSET is efficient and scalable...
  • Haploview

  • Referenced in 22 articles [sw11870]
  • context of medical genetic association studies, is becoming a routine research activity. Haploview...
  • Rassoc

  • Referenced in 12 articles [sw25402]
  • Robust Tests in Case-Control Genetic Association Studies in R. The case-control study ... analysis of case-control genetic association studies. The asymptotically optimal CATT can be used when ... commonly used tests in case-control association studies. For illustration, Rassoc is applied ... SNPs reported in four genome-wide association studies...
  • GCTA

  • Referenced in 16 articles [sw23135]
  • traits, SNPs identified by genome-wide association studies (GWAS) explain only a small fraction ... complex trait rather than testing the association of any particular SNP to the trait...
  • IMPUTE

  • Referenced in 11 articles [sw14375]
  • estimating (”imputing”) unobserved genotypes in SNP association studies. The program is designed to work seamlessly...
  • MaCH

  • Referenced in 7 articles [sw17274]
  • haplotypes and unobserved genotypes. Genome-wide association studies (GWAS) can identify common alleles that contribute ... also increases power of genetic association studies. We show that genotype imputation of common variants ... amounts of data typical in fine-mapping studies. Furthermore, we show the approach is applicable ... variety of populations. Finally, we illustrate how association analyses of unobserved variants will benefit from...
  • py-junctions

  • Referenced in 30 articles [sw29153]
  • package is useful for studying string junctions and their associated Lie algebraic structure...
  • cmenet

  • Referenced in 8 articles [sw21048]
  • reduction to efficiently perform model selection. Simulation studies demonstrate the improved performance of cmenet over ... SparseNet. Applied to a gene association study on fly wing shape, cmenet not only provides...
  • snpStats

  • Referenced in 7 articles [sw11396]
  • statistical methods for large SNP association studies, extending the snpMatrix package...
  • SNPHarvester

  • Referenced in 5 articles [sw35289]
  • detecting epistatic interactions in genome-wide association studies. Motivation: Hundreds of thousands of single nucleotide ... SNPs) are available for genome-wide association (GWA) studies nowadays. The epistatic interactions of SNPs ... detect SNP–SNP interactions in GWA studies. SNPHarvester creates multiple paths in which the visited ... groups tend to be statistically associated with diseases, and then harvests those significant SNP groups...
  • SNPassoc

  • Referenced in 4 articles [sw07122]
  • package SNPassoc: SNPs-based whole genome association studies. This package carries out most common analysis ... when performing whole genome association studies. These analyses include descriptive statistics and exploratory analysis ... calculation of Hardy-Weinberg equilibrium, analysis of association based on generalized linear models (either...
  • HAPGEN2

  • Referenced in 6 articles [sw17354]
  • analysis methods in genome-wide association studies. Simulation based on resampling known haplotypes is fast...
  • SimPed

  • Referenced in 3 articles [sw15080]
  • parametric and nonparametric) and family-based association studies are currently being carried out using dense ... often used for both linkage and association studies; however, to date there are no programs ... values for linkage and family-based association studies...
  • HLM

  • Referenced in 44 articles [sw06516]
  • have been developed to allow for the study of relationships at any level ... single analysis, while not ignoring the variability associated with each level of the hierarchy ... also predicts the random effects associated with each sampling unit at every level. While commonly ... nested within the individuals being studied. In addition, although the examples above implies that members...
  • HapBlock

  • Referenced in 5 articles [sw26434]
  • dynamic programming algorithms. Recent studies have revealed that linkage disequilibrium (LD) patterns vary across ... SNPs; tag SNPs) for genome-wide association studies. We have developed a suite of computer...
  • SNPs3D

  • Referenced in 5 articles [sw30035]
  • Candidate gene and SNP selection for association studies. Background: The relationship between disease susceptibility...
  • dmGWAS

  • Referenced in 3 articles [sw29291]
  • dense module searching for genome-wide association studies in protein–protein interaction networks. MOTIVATION ... recent success of genome-wide association studies (GWAS) is how to detect genetic signals beyond ... GWAS association data with that from prior-knowledge databases and proteome studies has recently gained ... genes for complex diseases by integrating the association signal from GWAS datasets into the human...