• SDPT3

  • Referenced in 630 articles [sw04009]
  • algorithm are incorporated. For example, step-lengths associated with semidefinite cones are calculated ... total of about 300 test problems to an accuracy of at least...
  • RRQR

  • Referenced in 21 articles [sw04673]
  • suite of codes as well as associated testing and timing drivers for computing rank-revealing...
  • toms/782

  • Referenced in 21 articles [sw05211]
  • suite of codes as well as associated testing and timing drivers for computing rank-revealing...
  • PYTHIA

  • Referenced in 29 articles [sw00747]
  • database schemas for testing suites and associated performance data in order to test sets...
  • Rassoc

  • Referenced in 12 articles [sw25402]
  • Null Distributions of Robust Tests in Case-Control Genetic Association Studies in R. The case ... study is an important design for testing association between genetic markers and a disease ... Cochran-Armitage trend test (CATT) is one of the most commonly used statistics ... well as other commonly used tests in case-control association studies. For illustration, Rassoc...
  • GCTA

  • Referenced in 16 articles [sw23135]
  • traits, SNPs identified by genome-wide association studies (GWAS) explain only a small fraction ... complex trait rather than testing the association of any particular SNP to the trait ... SNPs on the X chromosome and testing the hypotheses of dosage compensation. The GCTA software...
  • PBAT

  • Referenced in 5 articles [sw10529]
  • family-based association test for repeatedly measured quantitative traits adjusting for unknown environmental and/or polygenic ... effects. We propose a family-based association test, FBAT-PC, for studies with quantitative traits...
  • UNPHASED

  • Referenced in 6 articles [sw20040]
  • genotype data and uncertain haplotypes; Global association tests and tests of individual haplotypes; Conditioning tests ... that allow for previous associations of linked loci; Inclusion of information from additional tag markers ... genetic covariates; including parent-of-origin; Permutation tests allowing for multiple testing...
  • Babelomics

  • Referenced in 6 articles [sw36144]
  • transference of information), FatiWise, transcription factor association test, GenomeGO and tissues mining tool, respectively. Additionally...
  • FAMT

  • Referenced in 29 articles [sw11123]
  • algorithm. Adjusted tests statistics are derived, as well as the associated p-values. The proportion...
  • Matrix eQTL

  • Referenced in 5 articles [sw20450]
  • computationally complex as it involves independent testing for association for every transcript-SNP pair ... eQTL. Matrix eQTL can model and test for association using both linear regression and ANOVA ... gender, and clinical variables. It also supports testing of heteroscedastic models and models with correlated...
  • GEMMA

  • Referenced in 4 articles [sw23999]
  • linear mixed model (LMM) for marker association tests with a single phenotype to account ... multivariate linear mixed model (mvLMM) for testing marker associations with multiple phenotypes simultaneously while controlling...
  • pstca

  • Referenced in 29 articles [sw21650]
  • data (test cases). The site is maintained by Richard D. Christie, an Associate Professor ... first!). To use the archive, select the test case that interests you, then select...
  • SKAT

  • Referenced in 3 articles [sw26433]
  • package SKAT: SNP-Set (Sequence) Kernel Association Test. Functions for kernel-regression-based association tests...
  • PedGenie

  • Referenced in 4 articles [sw35514]
  • PedGenie: an analysis approach for genetic association testing in extended pedigrees and genealogies of arbitrary ... present a general approach to perform association analyses in pedigrees of arbitrary size and structure ... independent individuals to be analyzed together, to test genetic markers and qualitative or quantitative traits ... Single locus at a time, composite genotype tests, and haplotype analyses may all be performed...
  • HapMix

  • Referenced in 6 articles [sw33847]
  • combined, enabling more powerful tests of association than with either signal alone...
  • Statistix

  • Referenced in 3 articles [sw17939]
  • nonlinear regression, nonparametric tests, time series, association tests, survival analysis, quality control, power analysis...
  • ProbABEL

  • Referenced in 6 articles [sw10861]
  • choice for the identification of loci associated with complex traits. Currently, imputed single nucleotide polymorphisms ... step mixed model-based score test for association in samples with differential relationships, facilitating analysis...
  • MASTOR

  • Referenced in 2 articles [sw23134]
  • MASTOR: association testing of a quantitative trait in samples with related individuals, allowing for covariates ... program that performs mixed-model association testing of a quantitative trait in samples with known ... McPeek M. S. 2013 ”Mixed-Model Association Mapping of Quantitative Traits in Samples with Related ... mixed-model, retrospective score test for genetic association with a quantitative trait. MASTOR achieves high...
  • globaltest

  • Referenced in 2 articles [sw19391]
  • global × global test for testing associations between two large sets of variables. In high-dimensional ... present a novel approach to test for association between two sets of variables. Our approach ... generalizes the global test, which tests for association between a group of covariates ... compare the performance of multivariate global test (G2) with univariate global test. The method...