• PROMALS

  • Referenced in 5 articles [sw22476]
  • output includes a colored alignment augmented with information about sequence grouping, predicted secondary structures...
  • elrint3d

  • Referenced in 1 article [sw13934]
  • Dimensional Nonadaptive Automatic Cubature Routine Using a Sequence of Embedded Lattice Rules. A three-dimensional ... based on a 2s-copy lattice augmentation sequence, the seed lattice for which has been...
  • StepBrothers

  • Referenced in 1 article [sw34333]
  • model decomposes recombinant sequences into their ancestral portions and then augments each portion onto ... unique partially observed sequences. This data augmentation generates a random number of sequences related...
  • BIONJ

  • Referenced in 30 articles [sw08301]
  • when these estimates are obtained from aligned sequences. At each step it permits the selection ... finding the correct tree may be augmented by as much as 15%. (http://mbe.oxfordjournals.org/content/14/7/685.short)...
  • QPALM

  • Referenced in 6 articles [sw35397]
  • proximal augmented Lagrangian method. This method solves a sequence of inner subproblems which...
  • QSDPNAL

  • Referenced in 33 articles [sw18799]
  • QSDPNAL-Phase II, we design an augmented Lagrangian method (ALM) wherein the inner subproblem ... original linear systems and novel shadow sequences are constructed to alleviate the numerical difficulties brought...
  • Holophrasm

  • Referenced in 2 articles [sw30124]
  • using a neural-network-augmented bandit algorithm and a sequence-to-sequence model for action...
  • Conformer

  • Referenced in 4 articles [sw35794]
  • Conformer: Convolution-augmented Transformer for Speech Recognition. Recently Transformer and Convolution neural network (CNN) based ... sequence in a parameter-efficient way. To this regard, we propose the convolution-augmented transformer...
  • DeepAPI

  • Referenced in 1 article [sw15213]
  • generates an API sequence based on the context vector. We also augment the RNN Encoder ... that our approach generates largely accurate API sequences and outperforms the related approaches...
  • NCL

  • Referenced in 1 article [sw36527]
  • LANCELOT augmented Lagrangian method, reformulated as a short sequence of nonlinearly constrained subproblems that...
  • FPC

  • Referenced in 2 articles [sw20468]
  • basic fixed-point iterations should be augmented with a continuation approach. In brief, the continuation ... consists of solving (1) for an increasing sequence of μ values, using the solution...
  • ESLpred2

  • Referenced in 2 articles [sw35344]
  • eukaryotic proteins. Results: Here, we describe augmentation in the prediction performance obtained for our most ... redundant dataset encompassing three kingdoms specific protein sequence sets; 1198 fungi sequences, 2597 from animal...
  • DEGEN

  • Referenced in 1 article [sw07626]
  • that are suitable for convergence of the augmented Lagrangian methods, such as the recently proposed ... stationarity is guaranteed if the generated dual sequence is bounded, which we show ... itself is unbounded. Experiments with the ALGENCAN augmented Lagrangian solver on the MacMPEC and DEGEN...
  • HAMAP

  • Referenced in 1 article [sw22977]
  • UniProt, providing annotation for millions of unreviewed sequences of UniProtKB/TrEMBL. Here we report ... Database Issue of 2013. We continue to augment HAMAP with new family profiles and annotation ... which simplify the classification and annotation of sequences, and the incorporation of an improved sequence...
  • ktrain

  • Referenced in 2 articles [sw33372]
  • ktrain: A Low-Code Library for Augmented Machine Learning. We present ktrain, a low-code ... that support text data (e.g., text classification, sequence tagging, open-domain question-answering), vision data...
  • HybridNET

  • Referenced in 3 articles [sw14682]
  • genes. When looking at another segment of sequences, a different phylogenetic tree can be obtained ... maximum (acyclic) agreement forests. We then augment the program so that it can construct...
  • MPDopt

  • Referenced in 1 article [sw23094]
  • both offline and online optimization of control sequences for dynamic systems governed by differentiable nonlinear ... introducing control trajectory smoothing via state augmentation. Finally, we present a new Matlab toolbox...
  • asremlPlus

  • Referenced in 1 article [sw15468]
  • package asremlPlus: Augments the Use of ’Asreml’ in Fitting Mixed Models. Assists in automating ... history of the fitting of a sequence of models is kept in a data frame...
  • NFBLab

  • Referenced in 1 article [sw39676]
  • approach to treat neurological conditions and augment brain functions. Although the early NFB studies date ... describes signal processing tracts, experimental blocks and sequences including randomization of experimental blocks. NFBLab implements...
  • BoomerAMG

  • Referenced in 196 articles [sw00086]
  • BoomerAMG: A parallel algebraic multigrid solver and preconditioner...