• VMD

  • Referenced in 90 articles [sw18651]
  • designed for modeling, visualization, and analysis of biological systems such as proteins, nucleic acids, lipid ... lines, CPK spheres and cylinders, licorice bonds, backbone tubes and ribbons, cartoon drawings, and others...
  • UQLab

  • Referenced in 43 articles [sw19740]
  • software tool. UQLab provides now the software backbone of the Chair’s research, allowing ... rare event estimation (structural reliability), global sensitivity analysis, Bayesian techniques for inverse problems, etc. After...
  • JavaFoil

  • Referenced in 3 articles [sw19900]
  • methods for airfoil analysis. The following two methods build the backbone of the program...
  • BSMART

  • Referenced in 6 articles [sw07381]
  • BSMART: a Matlab/C toolbox for analysis of multichannel neural time series. BSMART, an acronym ... signals. The backbone of the BSMART project is Multivariate AutoRegressive (MAR) analysis that has been...
  • phytools

  • Referenced in 14 articles [sw10003]
  • major axis regression, a phylogenetic canonical correlation analysis, and a phylogenetic ANOVA; projecting a tree ... taxa; reducing a phylogeny to its backbone tree; dropping tips or adding tips to special...
  • METROPOLIS

  • Referenced in 2 articles [sw24044]
  • backbone of the software system and is used to integrate a variety of analysis...
  • Plasmo.jl

  • Referenced in 3 articles [sw28219]
  • scalable and are used as the backbone of a Julia -based software package that ... algebraic graph abstraction facilitates the implementation, analysis, and decomposition of optimization problems and we show...
  • FLoWS

  • Referenced in 1 article [sw24492]
  • reach some defined threshold. This type of analysis capabilities makes FLoWS useful for regional water ... aquatic and terrestrial ecosystem modelers. The fundamental backbone behind FLoWS is based on network...
  • 3DNA

  • Referenced in 4 articles [sw21991]
  • both DNA and RNA structures. The analysis routines identify and categorize all base interactions ... full atomic models with the sugar-phosphate backbone and publication quality ’standardized’ base stacking diagrams...
  • TPstructure

  • Referenced in 4 articles [sw23814]
  • consists of the specific rearrangement of the backbone, by which a pk-structure ... grammar facilitates fast Boltzmann sampling and statistical analysis. As a first application, we present...
  • LOOPER

  • Referenced in 1 article [sw17376]
  • search strategy with minimal sampling of the backbone torsion angles. During the initial conformational sampling ... values are determined from the analysis of a novel iso-energy contour map which ... interactions of the protein core with loop backbone atoms only. Construction and optimization...
  • Delivery

  • Referenced in 1 article [sw34728]
  • initial picks of the horizons. Post-inversion analysis of the inverted stochastic models then facilitates ... thus platform independent, but the SU data backbone makes the inversion particularly suited to Unix/Linux...
  • ProSTRIP

  • Referenced in 1 article [sw20833]
  • primary structure is not sufficient for the analysis of structural repeats. Thus, a new method ... repeats is made by calculating the protein backbone Cα angles. An internet computing server...
  • iFlow

  • Referenced in 1 article [sw14264]
  • presented significant new challenges for computational analysis tools. The development of an FCM software suite ... which sits on top of the Bioconductor backbone, enabling basic analyses by means of convenient...
  • Flamingo

  • Referenced in 1 article [sw12239]
  • that can help users in network data analysis. Flamingo is comprised of a server ... traffic data from a busy Internet backbone router, how Flamingo can be used to perform...
  • CaliBayes

  • Referenced in 1 article [sw27254]
  • modelling of complex biological processes forms the backbone of systems biology. Discrete stochastic models ... parallel and distributed approaches to computation and analysis. For these reasons, we have developed...
  • Expokit

  • Referenced in 200 articles [sw00258]
  • Expokit provides a set of routines aimed at...
  • MATCONT

  • Referenced in 443 articles [sw00551]
  • MATCONT: Matlab software for bifurcation study of dynamical...
  • MiniSat

  • Referenced in 566 articles [sw00577]
  • An extensible SAT-solver. MiniSat is a minimalistic...
  • QAPLIB

  • Referenced in 233 articles [sw00751]
  • A collection of electronically available data instances for...