• CellProfiler

  • Referenced in 17 articles [sw18751]
  • address a variety of biological questions quantitatively, including standard assays (for example, cell count, size...
  • CellAnimation

  • Referenced in 1 article [sw34971]
  • suited for a particular type of imaging assay. While it is possible to implement ... application that allows implementation of different biological assays such as cell tracking or ancestry recording...
  • GSNAP

  • Referenced in 1 article [sw17306]
  • data, and new types of biological assays. The genomic representation has been improved to include ... pipelines have facilitated the discovery of numerous biological phenomena...
  • DESeq2

  • Referenced in 27 articles [sw41938]
  • count data from high-throughput sequencing assays and test for differential expression based ... data with DESeq2.” Genome Biology, 15, 550. doi: 10.1186/s13059-014-0550-8...
  • AgentCell

  • Referenced in 6 articles [sw35544]
  • single-cell assay for bacterial chemotaxis. Motivation: In recent years, single-cell biology has focused ... bacterial chemotaxis, one of the best characterized biological systems. In this model, each bacterium ... move in a 3D environment. Digital chemotaxis assays reproduce experimental data obtained from both single...
  • testassay

  • Referenced in 0 articles [sw17896]
  • common way of validating a biological assay for is through a procedure, where m levels...
  • propr

  • Referenced in 1 article [sw15745]
  • relative data, including those biological count data produced by microarray assays or high-throughput...
  • Affycomp III

  • Referenced in 11 articles [sw14610]
  • several probes to assay each targeted transcript. This is a bonanza for the statistical geneticist ... graphs are justified by questions of biological interest and motivated by the presence of appropriate...
  • RBioplot

  • Referenced in 1 article [sw28146]
  • plotting, highly compatible with various molecular biology and biochemistry lab techniques, such ... western blotting, PCR, and enzyme activity assays...
  • PubChem PUG

  • Referenced in 1 article [sw36343]
  • information on chemical substances and their biological activities, developed and maintained by the US National ... unique chemical structures and 225 million bioactivity assay results, covering more than 9000 unique protein ... information resource for the chemical biology research community, it routinely receives more than 1 million...
  • HPeak

  • Referenced in 4 articles [sw29576]
  • sequencing read coverage. Conclusions: Using biologically relevant data collections, we found that HPeak showed ... Additionally, in comparison to the ChIP-chip assay, ChIP-Seq provides higher resolution along with...
  • SECT

  • Referenced in 8 articles [sw38960]
  • active study in the field of cancer biology. Its rapid progression and the relative time ... existing tumor shape quantifications and common molecular assays. Specifically, we demonstrate that SECT features alone...
  • MiRAnorm

  • Referenced in 0 articles [sw17554]
  • qPCR assays. A manuscript describing the method is submitted to Genome Biology under “MiRA-norm...
  • seqSample

  • Referenced in 1 article [sw31388]
  • estimation in bait-prey graphs. In cellular biology, node-and-edge graph or “network” data ... immunoprecipitation (CoIP). Bait-prey technologies assay relationships or “interactions” between protein pairs, with CoIP specifically...
  • MetaboLights

  • Referenced in 1 article [sw16939]
  • their reference spectra as well as their biological roles, locations, concentrations and raw data from ... submitted studies, encompassing 93 protocols for 714 assays, and span over 8 different species including...
  • HitWalker

  • Referenced in 1 article [sw36882]
  • relative to their weighted proximity to functional assay results in a protein–protein interaction network ... results in an intuitive manner to provide biological interpretation. Availability and implementation: The program, documentation...
  • FAF-Drugs3

  • Referenced in 0 articles [sw40717]
  • used for drug discovery and chemical biology projects to help in preparing compound libraries ... hand-curated structural alerts while Pan Assay Interference compounds (PAINS) and other, generally unwanted groups...
  • Matlab

  • Referenced in 13702 articles [sw00558]
  • MATLAB® is a high-level language and interactive...
  • R

  • Referenced in 10196 articles [sw00771]
  • R is a language and environment for statistical...
  • AUTO

  • Referenced in 958 articles [sw01059]
  • AUTO is a software for continuation and bifurcation...