• DAISY

  • Referenced in 45 articles [sw09059]
  • priori global identifiability is a structural property of biological and physiological models. It is considered...
  • BIOCHAM

  • Referenced in 43 articles [sw09927]
  • Biocham) is a modelling environment for systems biology, with some unique features for static analysis ... language to formalize the temporal properties of a biological system and validate models with respect...
  • Pse-in-One

  • Referenced in 41 articles [sw22407]
  • effectively formulate the sequence of a biological sample (such as DNA, RNA or protein) with ... Furthermore, the number of their built-in properties is limited, and hence it is often ... formulate the biological sequences according to their desired features or properties. In this article, with ... also generate those feature vectors with the properties defined by users themselves. These feature vectors...
  • LAS

  • Referenced in 18 articles [sw17180]
  • validation study examines quantitative properties of biclusters, biological and clinical assessments using auxiliary information...
  • DSTool

  • Referenced in 103 articles [sw06719]
  • systems arise in many disciplins of physics, biology and chemistry - basically always whenever something ... dynamical systems allow to compute important properties directly without the need for long brute-force...
  • CGAL

  • Referenced in 360 articles [sw00118]
  • design and modeling, geographic information systems, molecular biology, medical imaging, robotics and motion planning, mesh ... well as estimation of local differential properties, and approximation of ridges and umbilics), alpha shapes...
  • Bubbles

  • Referenced in 8 articles [sw08870]
  • have been proposed. These models predict properties of biological visual systems and can be used ... emergence of principal simple cell properties. Alternatively, simple cell properties are obtained by maximizing...
  • Lynx

  • Referenced in 10 articles [sw13643]
  • Lynx through a case-study from computational biology, namely, the RNA secondary structure prediction problem ... categories: structural constraints, which describe properties of the biological structure of the solution, and energetic...
  • PyBioNetFit

  • Referenced in 3 articles [sw34668]
  • model checking. PyBNF includes the Biological Property Specification Language (BPSL) for defining qualitative data...
  • VaxiJen

  • Referenced in 3 articles [sw26855]
  • they may share similar structures and biological properties. The antigenicity of a sequence...
  • 2D-MH

  • Referenced in 21 articles [sw19727]
  • physicochemical properties of their constituent amino acids. Introduction of graphic representation for biological sequences...
  • Apbsmem

  • Referenced in 4 articles [sw22298]
  • popular method for computing the electrostatic properties of biological systems is to numerically solve...
  • YLoc

  • Referenced in 2 articles [sw22451]
  • prediction was made and which biological property of the protein was mainly responsible...
  • BioLattice

  • Referenced in 1 article [sw17687]
  • interpret observed changes in terms of biological properties and relationships. One powerful approach ... gene expression clusters with biomedical ontologies and/or biological pathways. However, this approach evaluates only...
  • GeneRank

  • Referenced in 16 articles [sw27064]
  • generate prioritized gene lists by exploiting biological background information. Results: GeneRank is an intuitive modification ... PageRank that maintains many of its mathematical properties. It combines gene expression information with...
  • repDNA

  • Referenced in 12 articles [sw16473]
  • sequences by incorporating user-defined physicochemical properties and sequence-order effects. In order to develop ... powerful computational predictors for identifying the biological features or attributes of DNAs ... widely used features reflecting the physicochemical properties and sequence-order effects of DNAs and nucleotides...
  • GemCell

  • Referenced in 3 articles [sw01995]
  • database of biological specifics (the DBS), which specifies the cell properties and functions that depend ... serve as a broadly applicable platform for biological modeling and analysis, supporting user-friendly ... emergent properties, and hypothesis testing, for a wide variety of biological systems...
  • iRNAm5C-PseDNC

  • Referenced in 22 articles [sw24531]
  • methylcytosine sites by incorporating physical-chemical properties into pseudo dinucleotide composition. Occurring at cytosine ... PTCM). The modification plays significant roles in biological processes by regulating RNA metabolism in both ... incorporating ten types of physical-chemical properties into pseudo dinucleotide composition via the auto/cross-covariance approach...
  • iDNA6mA-PseKNC

  • Referenced in 21 articles [sw27663]
  • methyladenosine sites by incorporating nucleotide physicochemical properties into PseKNC. N6-methyladenine (6mA) is one kind ... will be very helpful for revealing the biological functions of 6mA, but it is time ... that is established by incorporating nucleotide physicochemical properties into Pseudo K-tuple Nucleotide Composition (PseKNC...
  • ShaPo

  • Referenced in 4 articles [sw34849]
  • applications from astrophysics to biology or computer graphics. Their properties are especially widely used...