• iRSpot-PseDNC

  • Referenced in 65 articles [sw22437]
  • dinucleotide composition. Meiotic recombination is an important biological process. As a main driving force...
  • BIOCHAM

  • Referenced in 43 articles [sw09927]
  • Biocham) is a modelling environment for systems biology, with some unique features for static analysis ... formalize the temporal properties of a biological system and validate models with respect to such...
  • iLoc-Euk

  • Referenced in 37 articles [sw22434]
  • ignored because they usually posses some unique biological functions worthy of our special notice ... useful bioinformatics tool for Molecular Cell Biology, Proteomics, System Biology, and Drug Development Also...
  • LAMMPS

  • Referenced in 58 articles [sw05952]
  • gaseous state. It can model atomic, polymeric, biological, metallic, or granular systems using a variety...
  • Memtype-2L

  • Referenced in 39 articles [sw16472]
  • because they are closely relevant to the biological function of the query protein ... interaction process with other molecules in a biological system. Particularly, with the avalanche of protein...
  • limma

  • Referenced in 54 articles [sw10458]
  • experiments. Experiments with technical as well as biological replication are considered. Empirical Bayes test statistics...
  • RegulonDB

  • Referenced in 51 articles [sw25948]
  • organism. This paper summarizes the improvements, new biology and new features available in version...
  • edgeR

  • Referenced in 49 articles [sw06936]
  • model is used to account for both biological and technical variability. Empirical Bayes methods...
  • EMBOSS

  • Referenced in 35 articles [sw10917]
  • EMBOSS is ”The European Molecular Biology Open Software Suite”. EMBOSS is a free Open Source ... developed for the needs of the molecular biology (e.g. EMBnet) user community. The software automatically...
  • PDB2PQR

  • Referenced in 33 articles [sw13087]
  • output compatible with several popular computational biology packages. This service is intended to facilitate ... thereby broaden the accessibility to the biological community of continuum electrostatics analyses of biomolecular systems...
  • STAMP

  • Referenced in 43 articles [sw09536]
  • subjects, including economics, finance, sociology, management science, biology, geography, meteorology and engineering. STAMP bridges...
  • Krill herd

  • Referenced in 43 articles [sw25670]
  • inspired optimization algorithm. A novel biologically-inspired algorithm, namely krill herd (KH) is proposed...
  • Euk-mPLoc

  • Referenced in 42 articles [sw26860]
  • because they may have some very special biological functions intriguing to investigators in both basic...
  • iRNA-PseColl

  • Referenced in 30 articles [sw24441]
  • modifications, which are essential for numerous biological processes. Knowledge about the occurrence sites ... depth understanding of their biological functions and mechanism. Unfortunately, it is both time-consuming...
  • MUMMER

  • Referenced in 40 articles [sw17256]
  • recently described in our 2004 Genome Biology paper. We have also developed a GPU accelerated...
  • REVEAL

  • Referenced in 28 articles [sw36999]
  • models, essentially allowing direct application to realistic biological data sets. The ability to adequately solve ... depth analysis of complex dynamic systems in biology and other fields...
  • DuMuX

  • Referenced in 39 articles [sw14293]
  • remediation problems, transport of therapeutic agents through biological tissue, and subsurface-atmosphere coupling. The development...
  • Plant-mPLoc

  • Referenced in 27 articles [sw22435]
  • fundamental goals in proteomics and cell biology is to identify the functions of proteins ... Actually, such multiplex proteins might have special biological functions worthy of particular notice. The present...
  • Fiji

  • Referenced in 23 articles [sw09754]
  • Fiji: an open-source platform for biological-image analysis. Fiji is a distribution ... popular open-source software ImageJ focused on biological-image analysis. Fiji uses modern software engineering ... productive collaboration between computer science and biology research communities...
  • PROSITE

  • Referenced in 37 articles [sw17326]
  • currently consists of a large collection of biologically meaningful motifs that are described as patterns...