• HMDB

  • Referenced in 9 articles [sw28995]
  • used for applications in metabolomics, clinical chemistry, biomarker discovery and general education. The database...
  • BioMark

  • Referenced in 5 articles [sw14240]
  • package BioMark: Find Biomarkers in Two-Class Discrimination Problems. Variable selection methods are provided...
  • GEMS

  • Referenced in 6 articles [sw36893]
  • system for automated cancer diagnosis and biomarker discovery from microarray gene expression data. The success ... high-quality cancer diagnostic models and biomarker discovery from microarray gene expression data. In order...
  • 3D Slicer

  • Referenced in 8 articles [sw25754]
  • further facilitate development and validation of imaging biomarkers using 3D Slicer...
  • curatedOvarianData

  • Referenced in 6 articles [sw17291]
  • formats. We confirm that the recently proposed biomarker CXCL12 is associated with patient survival, independently...
  • JMfit

  • Referenced in 4 articles [sw14766]
  • treatment effect while accounting for a longitudinal biomarker such as patient-reported outcomes or immune...
  • RF++

  • Referenced in 4 articles [sw15909]
  • valid fashion. RF++ also identifies important variables (biomarkers) in datasets with large numbers of variables...
  • digeR

  • Referenced in 2 articles [sw24474]
  • used as a routine proteomics technique for biomarker discovery. Analyzing such high-dimensional data requires ... changes from different biological states and support biomarker discovery through multivariate analysis techniques. AVAILABILITY: digeR...
  • JDINAC

  • Referenced in 2 articles [sw40329]
  • same time, JDINAC uses the network biomarkers to build a classification model. The novelty ... high accuracy by virtue of the identified biomarkers. JDINAC provides a general framework for feature...
  • MetaboAnalyst

  • Referenced in 3 articles [sw28993]
  • that are significantly different between two conditions (biomarker discovery); 2) to use the metabolomic data...
  • emba

  • Referenced in 1 article [sw35159]
  • package emba: Ensemble Boolean Model Biomarker Analysis.Analysis and visualization of an ensemble of boolean models ... biomarker discovery in cancer cell networks. The package allows to easily load the simulation data ... Thus, given user-specific thresholds, important nodes (biomarkers) can be accessed in the sense that ... make the models predict specific synergies (synergy biomarkers) or have better performance in general (performance...
  • multiMarker

  • Referenced in 1 article [sw41424]
  • Model to Infer Food Intake from Multiple Biomarkers. A latent variable model based on factor ... designed to infer food intake from multiple biomarkers data. The model is framed within ... which provides flexibility to adapt to different biomarker distributions and facilitates inference on food intake ... from biomarker data alone, along with the associated uncertainty. Details are in D’Angelo...
  • Imsmining

  • Referenced in 1 article [sw13471]
  • tool for imaging mass spectrometry data biomarker selection and classification We developed IMSmining, a free ... Main functions of IMSmining include data visualization, biomarker selection, and classification using advanced multivariate analysis ... biological structure and the potential biomarkers. This software package can be downloaded from...
  • LCox

  • Referenced in 1 article [sw30164]
  • great interest to select informative longitudinal biomarkers (e.g. genes) related to the survival outcome ... computationally efficient tool, LCox, for selecting informative biomarkers related to the survival outcome using ... different forms of dependence between the longitudinal biomarkers and the survival outcome. We show that...
  • JTrack

  • Referenced in 1 article [sw39381]
  • JTrack: A Digital Biomarker Platform for Remote Monitoring in Neurological and Psychiatric Diseases. Objective: Health ... licenses) platform for remote assessment of digital biomarkers (DB) in neurological, psychiatric and other indications ... presented here. Conclusion: Smartphone-based Digital Biomarker data may provide valuable insight into daily life...
  • Corbi

  • Referenced in 2 articles [sw17707]
  • alignment, subnetwork extraction and search, network biomarker identification...
  • lplb

  • Referenced in 2 articles [sw31428]
  • package for multivariate covariates-biomarker interaction...
  • LIMPIC

  • Referenced in 2 articles [sw35379]
  • protein profiling is a promising tool for biomarker discovery in clinical proteomics. However, the development...
  • QuPath

  • Referenced in 2 articles [sw37672]
  • panel of tumor identification and high-throughput biomarker evaluation tools, QuPath provides researchers with powerful...
  • MS-BID

  • Referenced in 1 article [sw27622]
  • based comparative proteomic analysis. MS-BID (MS Biomarker Discovery Platform) is an integrative computational pipeline ... biomarker discovery using LC-MS-based comparative proteomic analysis. This platform consists of several computational...