• DAISY

  • Referenced in 45 articles [sw09059]
  • test global identifiability of biological and physiological systems. A priori global identifiability is a structural ... biomedical experiments. Many interesting biological models are nonlinear but identifiability analysis for nonlinear system turns...
  • dReach

  • Referenced in 13 articles [sw20164]
  • nonlinear hybrid systems. It has scaled well on various realistic models from biomedical and robotics...
  • Galaxy

  • Referenced in 12 articles [sw16927]
  • challenge for biomedical researchers. Here we describe an interactive system, Galaxy, that combines the power...
  • BCI2000

  • Referenced in 14 articles [sw20617]
  • operating protocols. However, the typical BCI system is designed specifically for one particular BCI method ... investigators, biomedical engineers, and computer scientists the concepts that the BC12000 system is based upon...
  • MedScan

  • Referenced in 3 articles [sw23129]
  • number of information extraction systems for the biomedical domain have been reported, but none ... There is an urgent need for a system that has broad coverage and performs well ... text applications. RESULTS: We present a general biomedical domain-oriented NLP engine called MedScan that ... grammar and lexicon. Preliminary evaluation of the system’s performance, accuracy, and coverage exhibited encouraging...
  • SAMBO

  • Referenced in 3 articles [sw09799]
  • SAMBO—A system for aligning and merging biomedical ontologies. Due to the recent explosion ... ontologies. In recent years many biomedical ontologies have been developed and many of these ontologies ... Further, we developed a system for aligning and merging biomedical ontologies (SAMBO) based on this ... time and compared SAMBO with two other systems...
  • PNAD-CSS

  • Referenced in 3 articles [sw35910]
  • Results: We have developed PNAD Construction Support System (PNAD-CSS), which offers various convenient facilities ... collected from abstracts in biomedical papers. The system allows the users to concentrate on higher...
  • LINNAEUS

  • Referenced in 2 articles [sw23132]
  • multiple types of document formats in the biomedical domain (MEDLINE, PMC, BMC, OTMI, text ... LINNAEUS: a species name identification system for biomedical literature. BMC Bioinformatics...
  • caGrid

  • Referenced in 10 articles [sw20965]
  • Biomedical Informatics Grid (caBIGtrade mark), to develop a federation of interoperable research information systems. RESULTS...
  • NIMROD

  • Referenced in 1 article [sw35079]
  • widespread tools for describing dynamical systems. In biomedical sciences, data from each subject ... combination of difficulties coming from the ODE system and from the presence of random effects...
  • JDeal

  • Referenced in 1 article [sw07052]
  • profit activities. Developed at LaSEEB - Evolutionary Systems and Biomedical Engineering Lab., Instituto de Sistemas...
  • DISEASES

  • Referenced in 1 article [sw29290]
  • extracting disease–gene associations from biomedical abstracts. The system consists of a highly efficient dictionary...
  • GeneLibrarian

  • Referenced in 1 article [sw30046]
  • effective gene-information summarization and visualization system. Background: Abundant information about gene products is stored ... integrated it with a biomedical literature summarization system to establish a platform, GeneLibrarian, to provide...
  • MaSTerClass

  • Referenced in 1 article [sw17381]
  • case-based reasoning system for the classification of biomedical terms. Motivation: The sheer volume ... relevant information. Specialized semantic networks (such as biomedical ontologies, terminologies or semantic lexicons) can significantly ... MaSTerClass system implements the case-based reasoning methodology for the classification of biomedical terms. Availability...
  • ABNER

  • Referenced in 6 articles [sw30049]
  • entity names in text. Summary: ABNER (A Biomedical Named Entity Recognizer) is an open source ... core is a machine learning system using conditional random fields with a variety of orthographic...
  • GenBank

  • Referenced in 8 articles [sw28961]
  • accessible through the NCBI Entrez retrieval system, which integrates data from the major ... protein structure and domain information, and the biomedical journal literature via PubMed. BLAST provides sequence...
  • TPOT-MDR

  • Referenced in 1 article [sw18807]
  • ever-growing databases of biomedical data in health care systems around the world. However, effectively ... expert knowledge-guided feature selector for large biomedical data sets. We demonstrate TPOT...
  • OpticStudio

  • Referenced in 2 articles [sw32016]
  • laser system design software. Top companies in aerospace, astronomy, automotive, biomedical research, consumer electronics...
  • BodyParts3D

  • Referenced in 3 articles [sw17747]
  • system in human anatomy, which may facilitate management of samples and data in biomedical research...
  • GNAT

  • Referenced in 1 article [sw29376]
  • normalization systems are publicly available as source code or web services for biomedical text mining ... normalization of gene and protein mentions in biomedical text. The library can be used ... integrated with other text-mining systems, as a framework to add user-specific extensions...