• RRBSMAP

  • Referenced in 2 articles [sw23509]
  • scale. RRBS involves restriction-enzyme digestion, bisulfite conversion and size selection, resulting in DNA sequencing...
  • OxyBS

  • Referenced in 1 article [sw30157]
  • with tandem arrays, one using conventional bisulfite conversion, the other using oxy-bisulfite conversion...
  • PASS-bis

  • Referenced in 1 article [sw23505]
  • SOLiD color space, where the bisulfite conversion C/T changes two adjacent colors into 16 possible...
  • BatMeth

  • Referenced in 1 article [sw34373]
  • methylcytosine sites in the genome. However, bisulfite conversion introduces mismatches between the reads...
  • BEAT

  • Referenced in 3 articles [sw23480]
  • resolution analysis of DNA methylation patterns from bisulfite sequencing data, including the detection of regional ... position, thereby compensating for low coverage, incomplete conversion and sequencing errors.AVAILABILITY AND IMPLEMENTATION: BEAT...
  • Matlab

  • Referenced in 13100 articles [sw00558]
  • MATLAB® is a high-level language and interactive...
  • GATK

  • Referenced in 16 articles [sw12019]
  • The genome analysis toolkit: a MapReduce framework for...
  • Samtools

  • Referenced in 22 articles [sw14583]
  • Samtools is a suite of programs for interacting...
  • FastQC

  • Referenced in 8 articles [sw16946]
  • FastQC: A quality control tool for high throughput...
  • FASTX

  • Referenced in 2 articles [sw17090]
  • The FASTX-Toolkit is a collection of command...
  • Trimmomatic

  • Referenced in 5 articles [sw17091]
  • Trimmomatic: a flexible trimmer for Illumina sequence data...
  • Cutadapt

  • Referenced in 2 articles [sw17303]
  • Cutadapt removes adapter sequences from high-throughput sequencing...
  • GitHub

  • Referenced in 2108 articles [sw23170]
  • GitHub (originally known as Logical Awesome LLC)[3...
  • BS Seeker

  • Referenced in 6 articles [sw23481]
  • BS Seeker: precise mapping for bisulfite sequencing. BACKGROUND...
  • BSmooth

  • Referenced in 11 articles [sw23483]
  • BSmooth: from whole genome bisulfite sequencing reads to...
  • Bismark

  • Referenced in 5 articles [sw23504]
  • Bismark: a flexible aligner and methylation caller for...
  • BSMAP

  • Referenced in 5 articles [sw23515]
  • BSMAP: whole genome bisulfite sequence MAPping program. BACKGROUND...
  • VarScan

  • Referenced in 8 articles [sw27471]
  • VarScan is a tool that detects variants (SNPs...
  • Bowtie 2

  • Referenced in 20 articles [sw29190]
  • Bowtie 2 is an ultrafast and memory-efficient...
  • mrsFAST

  • Referenced in 2 articles [sw29574]
  • mrsFAST: a cache-oblivious algorithm for short-read...