• DelPhi Web Server

  • Referenced in 8 articles [sw17209]
  • Delphi web server: A comprehensive online suite for electrostatic calculations of biological macromolecules and their ... server, the DelPhi web server, which utilizes DelPhi program to calculate electrostatic energies ... ionic distributions, and dielectric map. The server provides extra services to fix structural defects ... calculated, the potential can be mapped onto the molecule surface. The DelPhi web server...
  • SDPBS

  • Referenced in 7 articles [sw17208]
  • SDPBS web server for calculation of electrostatics of ionic solvated biomolecules. The Poisson-Boltzmann equation ... important implicit solvent continuum model for calculating electrostatics of protein in ionic solvent. We recently ... scientific community, we present an SDPBS web server in this paper that allows clients ... calculate PBE solutions in a remote and user friendly fashion. The web server is available...
  • PDB2PQR

  • Referenced in 35 articles [sw13087]
  • Unfortunately, the limiting step in continuum electrostatics calculations is often the addition of missing atomic ... server automates many of the common tasks of preparing structures for continuum electrostatics calculations, including...
  • ProtorP

  • Referenced in 2 articles [sw35300]
  • protein associations in 3D structures. The server calculates a series of physical and chemical parameters ... atom composition and secondary structure contributions. The server is flexible, in that it allows users ... upload and analyse proprietary files. The properties calculated can be compared with parameter distributions ... classes of protein associations provided on the server website. The server provides an efficient...
  • FoldX

  • Referenced in 9 articles [sw21771]
  • FoldX web server: an online force field. FoldX is an empirical force field that ... core functionality of FoldX, namely the calculation of the free energy of a macromolecule based ... server at http://foldx.embl.de/. The current release allows the calculation of the stability...
  • PBEQ-Solver

  • Referenced in 15 articles [sw17203]
  • users. Users can interactively inspect the calculated electrostatic potential on the solvent-accessible surface ... server, and to increase the efficiency in visualization, all the PB calculations are performed with...
  • DelPhiForce

  • Referenced in 2 articles [sw34189]
  • DelPhiForce web server: electrostatic forces and energy calculations and visualization. Summary: Electrostatic force ... acting between atoms and macromolecules. Therefore, accurate calculations of electrostatic forces are crucial for revealing ... processes. We developed a DelPhiForce web server to calculate and visualize the electrostatic forces...
  • STATGRAPHICS

  • Referenced in 10 articles [sw00912]
  • common formats. The calculations are performed remotely on a web server and the results returned...
  • Jasp

  • Referenced in 6 articles [sw35567]
  • client can execute calculations on more than one servers and can perform distributed computing. Jasp...
  • DelPhiPKa

  • Referenced in 2 articles [sw34312]
  • prediction web server is released, which implements DelPhi Gaussian dielectric function to calculate electrostatic potentials ... capability of pKa calculations beyond proteins. The web server allows the end-user to protonate ... biomolecule at particular pH based on calculated pKa values and provides the downloadable file ... speed of the protocol. Implementation: The web server follows a client-server architecture built...
  • PDE App

  • Referenced in 1 article [sw32482]
  • framework for accurate and interactive calculation and visualization of the parametric dependence of the pressure ... interpreted by a PDE App Server which then invokes ... parallel cloud-based SCRBE Online Computation Server for calculation of the pressure and associated...
  • PROMETHEE

  • Referenced in 1 article [sw15624]
  • network. Functions include: Remote execution of calculations on servers or clusters running the computer codes ... task. Dynamic distribution and parallel processing of calculations over all available computing resources. Archiving...
  • Numericjs

  • Referenced in 2 articles [sw31630]
  • complex calculations in the browser and thus avoid the latency of asking a server ... server at all) since your web app will perform all its calculations in the client...
  • BIPS

  • Referenced in 1 article [sw18499]
  • Sensitivity and specificity of the server have been calculated using known PPIs from different interactomes...
  • MITOPRED

  • Referenced in 5 articles [sw26856]
  • prediction of mitochondrial proteins. MITOPRED web server enables prediction of nucleus-encoded mitochondrial proteins ... mitochondrial and non-mitochondrial locations. Pre-calculated predictions are instantly accessible for proteomes of Saccharomyces ... calculated prediction database so as to provide access to the most current data. The server...
  • PDB_Hydro

  • Referenced in 3 articles [sw14705]
  • electrostatics. We describe a new way to calculate the electrostatic properties of macromolecules which eliminates ... equation (GPBLE). We have implemented a web server (http://lorentz.immstr.pasteur.fr/pdb_hydro.php) that both numerically solves ... calculation, and can be used for other modeling purposes. We expect this web server ... whom these profiles could improve the calculation of interaction energies in water between ligands...
  • iHyd-PseCp

  • Referenced in 15 articles [sw23952]
  • Random Forest” algorithm to operate the calculation. Rigorous jackknife tests indicated that the new predictor ... most experimental scientists, a user-friendly web-server for iHyd-PseCp has been established...
  • QMEAN

  • Referenced in 7 articles [sw17377]
  • model has to be selected. The QMEAN server provides access to two scoring functions successfully ... clustering-based scoring function QMEANclust which calculates a global and local quality estimate based ... ensemble provided by the user. The web server performs a ranking of the input models...
  • DINAMelt

  • Referenced in 12 articles [sw36131]
  • nucleic acid melting prediction. The DINAMelt web server simulates the melting ... molecular species is automatically taken into account. Calculations consider not only the heterodimer, but also ... temperatures within a user-specified range, calculations predict species mole fractions together with the free ... capacity and UV absorbance versus temperature. This server is connected to an active research program...
  • ARIAweb

  • Referenced in 1 article [sw41915]
  • ARIAweb: a server for automated NMR structure calculation. Nuclear magnetic resonance (NMR) spectroscopy...