• horserule

  • Referenced in 4 articles [sw27913]
  • Bayesian model for flexible nonlinear regression and classification using tree ensembles. The model is based ... gene expression data for cancer classification. The posterior sampling, prediction and graphical tools for interpreting...
  • boost

  • Referenced in 36 articles [sw35655]
  • package boost: BagBoosting for tumor classification with gene expression data. Motivation: Microarray experiments are expected ... contribute significantly to the progress in cancer treatment by enabling a precise and early diagnosis...
  • PICNIC

  • Referenced in 6 articles [sw20386]
  • Markov model algorithm bespoke to cancer. This produces genotype classification, specification of regions of loss ... affymetrix genome-wide SNP6.0 data from 755 cancer cell lines, enabling inference upon a number...
  • BCDForest

  • Referenced in 1 article [sw34147]
  • cascade deep forest model towards the classification of cancer subtypes based on gene expression data ... model, so-called BCDForest, to address cancer subtype classification on small-scale biology datasets, which ... methods in application of cancer subtype classification. Conclusions: The multi-class-grained scanning and boosting ... provides a useful approach to the classification of cancer subtypes by using deep learning...
  • GEMS

  • Referenced in 4 articles [sw36893]
  • automated development and evaluation of high-quality cancer diagnostic models and biomarker discovery from microarray ... conducted a comprehensive evaluation of classification algorithms using 11 cancer microarray datasets. In this paper...
  • PLASQ

  • Referenced in 6 articles [sw18746]
  • from each of the parental chromosomes in cancer cells from single-nucleotide polymorphism (SNP) microarray ... model that takes advantage of a novel classification of probes on the array ... result of this classification, we are able to fit the model to the data using ... able to provide a generalized genotype in cancer samples (e.g., CCCCT at an amplified...
  • PINCAGE

  • Referenced in 1 article [sw35031]
  • integration of cancer genomics data for perturbed gene identification and sample classification. Model: Here...
  • Her2Net

  • Referenced in 1 article [sw27573]
  • semantic segmentation and classification of cell membranes and nuclei in breast cancer evaluation. We present ... growth factor receptor-2 (HER2)-stained breast cancer images with minimal user intervention. This ... softmax layer were also used for classification and error estimation. Finally, HER2 scores were calculated ... cell membrane and nucleus detection, segmentation, and classification and HER2 scoring. Our proposed Her2Net achieved...
  • MALDIquant

  • Referenced in 3 articles [sw15881]
  • cancer data set, starting from raw mass spectrometry measurements and ending at multivariate classification...
  • CASPAR

  • Referenced in 6 articles [sw12242]
  • shown to correlate with survival in several cancers, however, analysis of the data is difficult ... available, resulting in severely underdetermined regression or classification models. Several approaches exist to classify patients...
  • Genefu

  • Referenced in 1 article [sw18970]
  • heterogeneity of breast cancer have produced a plethora of molecular subtype classification and prognosis prediction ... enable comparison of existing signatures and classification models between each other and with new models ... molecular subtyping and prognostication in breast cancer. Availability and implementation: The genefu package is available...
  • Arrow plot

  • Referenced in 1 article [sw30012]
  • molecular classification of tumors it is important to identify significant subtypes of cancer. Bimodal...
  • partDSA

  • Referenced in 2 articles [sw07441]
  • continuous in nature; important examples in cancer studies might include level of toxicity or time ... such risk groups. Two such methods are Classification and Regression Trees (CART) and a more ... analysis of clinical trial data on brain cancer patients. The implementation of partDSA for uncensored...
  • maskmeans

  • Referenced in 1 article [sw35561]
  • splitting, with an application to multiomic breast cancer data. Multiview data, which represent distinct ... among observations. A large number of multiview classification algorithms have been proposed in the fields ... motivated by an application involving multiomic breast cancer data from The Cancer Genome Atlas, where...
  • CoClust

  • Referenced in 3 articles [sw19990]
  • require either to choose a starting classification or to set a priori the number ... CoClust to real microarray data of breast-cancer patients...
  • BCBCSF

  • Referenced in 1 article [sw07436]
  • Bias-corrected hierarchical Bayesian classification with a selected subset of high-dimensional features Class prediction ... prognosis of a certain disease (e.g., cancer). For computational and other reasons, it is necessary ... this article we develop a hierarchical Bayesian classification method that can correct for this feature...
  • survHD

  • Referenced in 1 article [sw25071]
  • evaluation of models are distinct from classification problems. Our R-package survHD provides a framework ... package using a well-known cancer microarray data set. Additionally, we will explain the built...
  • ICGE

  • Referenced in 1 article [sw23444]
  • ways to diagnose and treat cancer and other diseases. Clustering algorithms are a useful approach ... level. An important problem associated with gene classification is to discern whether the clustering process...
  • PAM

  • Referenced in 1 article [sw14716]
  • provides R functions for carrying out sample classification from gene expression data, by the method ... described in the paper Diagnosis of multiple cancer types by shrunken centroids of gene expression...
  • DeepChrome

  • Referenced in 1 article [sw15813]
  • developing ’epigenetic drugs’ for diseases like cancer. Previous studies for quantifying the relationship between histone ... Machines and Random Forests for gene expression classification task on 56 different cell-types from...