• sugsvarsel

• Referenced in 2 articles [sw35024]
• mixtures, with an application to pan-cancer proteomics...

• canprot

• Referenced in 0 articles [sw20436]
• down-) expressed proteins identified in proteomic studies of cancer and in cell culture experiments. Tables ... compositional differences and thermodynamic potentials for proteomic transformations...

• BART-BMA

• Referenced in 5 articles [sw23498]
• simulated data and data from two real proteomic experiments, one to distinguish between patients with ... classify aggressive from non-aggressive prostate cancer. We compare our results to their main competitors...

• PolySearch

• Referenced in 1 article [sw16755]
• associated with breast cancer’. Given that many queries in genomics, proteomics or metabolomics involve these...

• WaveSpect0

• Referenced in 4 articles [sw08760]
• data analysis. A wavelet-based algorithm for proteomic data processing is developed. A MATLAB implementation ... real MS data sets for different cancer research projects in Vanderbilt Ingram Cancer Center show...

• PGTools

• Referenced in 1 article [sw31812]
• analysis of mass-spectrometry data using combined proteomic and genomic backgrounds. A single command ... transcripts, identify altered proteins associated with cancer, and visualize genome scale peptide data sets using ... utility of PGTools using a colorectal cancer data set that led to the identification ... novel protein coding regions missed by conventional proteomic approaches. PGTools should be equally useful...

• Quokka

• Referenced in 5 articles [sw27666]
• family-specific phosphorylation sites in the human proteome. Motivation: Kinase-regulated phosphorylation is a ubiquitous ... with a variety of human diseases, especially cancers. In light of this, a number...

• Sets2Networks

• Referenced in 1 article [sw24189]
• protein interactions from high-throughput mass-spectrometry proteomics, integrate data from Chip-seq and loss ... regulators, extract a network that connects 53 cancer drugs to each other...

• DUET

• Referenced in 1 article [sw16881]
• protein stability using an integrated computational approach. Cancer genome and other sequencing initiatives are generating ... structure and function of the proteome, as well as to guide protein engineering, accurate...

• ASPicDB

• Referenced in 2 articles [sw17172]
• responsible for the expansion of transcriptome and proteome complexity in human and other organisms. Although ... tissue-specific splicing patterns of normal and cancer cells, based on available EST sequences...

• dmGWAS

• Referenced in 3 articles [sw29291]
• with that from prior-knowledge databases and proteome studies has recently gained attention. These methodologies ... GWAS datasets for complex diseases, i.e. breast cancer and pancreatic cancer. For each disease...

• Matlab

• Referenced in 13702 articles [sw00558]
• MATLAB® is a high-level language and interactive...

• mclust

• Referenced in 315 articles [sw00563]
• R package mclust: Normal Mixture Modeling for Model...

• R

• Referenced in 10196 articles [sw00771]
• R is a language and environment for statistical...

• STATISTICA

• Referenced in 37 articles [sw00913]
• Since 1984, StatSoft has been developing the STATISTICA...

• STAR

• Referenced in 14 articles [sw02515]
• STAR: ultrafast universal RNA-seq aligner. Motivation: Accurate...

• NEURON

• Referenced in 189 articles [sw03059]
• Parallel network simulations with NEURON. The NEURON simulation...

• UCI-ml

• Referenced in 3444 articles [sw04074]
• UC Irvine Machine Learning Repository. We currently maintain...

• Bioconductor

• Referenced in 328 articles [sw04205]
• Bioconductor provides tools for the analysis and comprehension...

• fda (R)

• Referenced in 1571 articles [sw04511]
• fda: Functional Data Analysis , These functions were developed...