• sugsvarsel

  • Referenced in 2 articles [sw35024]
  • mixtures, with an application to pan-cancer proteomics...
  • canprot

  • Referenced in 0 articles [sw20436]
  • down-) expressed proteins identified in proteomic studies of cancer and in cell culture experiments. Tables ... compositional differences and thermodynamic potentials for proteomic transformations...
  • BART-BMA

  • Referenced in 5 articles [sw23498]
  • simulated data and data from two real proteomic experiments, one to distinguish between patients with ... classify aggressive from non-aggressive prostate cancer. We compare our results to their main competitors...
  • PolySearch

  • Referenced in 1 article [sw16755]
  • associated with breast cancer’. Given that many queries in genomics, proteomics or metabolomics involve these...
  • WaveSpect0

  • Referenced in 4 articles [sw08760]
  • data analysis. A wavelet-based algorithm for proteomic data processing is developed. A MATLAB implementation ... real MS data sets for different cancer research projects in Vanderbilt Ingram Cancer Center show...
  • PGTools

  • Referenced in 1 article [sw31812]
  • analysis of mass-spectrometry data using combined proteomic and genomic backgrounds. A single command ... transcripts, identify altered proteins associated with cancer, and visualize genome scale peptide data sets using ... utility of PGTools using a colorectal cancer data set that led to the identification ... novel protein coding regions missed by conventional proteomic approaches. PGTools should be equally useful...
  • Quokka

  • Referenced in 5 articles [sw27666]
  • family-specific phosphorylation sites in the human proteome. Motivation: Kinase-regulated phosphorylation is a ubiquitous ... with a variety of human diseases, especially cancers. In light of this, a number...
  • Sets2Networks

  • Referenced in 1 article [sw24189]
  • protein interactions from high-throughput mass-spectrometry proteomics, integrate data from Chip-seq and loss ... regulators, extract a network that connects 53 cancer drugs to each other...
  • DUET

  • Referenced in 1 article [sw16881]
  • protein stability using an integrated computational approach. Cancer genome and other sequencing initiatives are generating ... structure and function of the proteome, as well as to guide protein engineering, accurate...
  • ASPicDB

  • Referenced in 2 articles [sw17172]
  • responsible for the expansion of transcriptome and proteome complexity in human and other organisms. Although ... tissue-specific splicing patterns of normal and cancer cells, based on available EST sequences...
  • dmGWAS

  • Referenced in 3 articles [sw29291]
  • with that from prior-knowledge databases and proteome studies has recently gained attention. These methodologies ... GWAS datasets for complex diseases, i.e. breast cancer and pancreatic cancer. For each disease...
  • Matlab

  • Referenced in 13702 articles [sw00558]
  • MATLAB® is a high-level language and interactive...
  • mclust

  • Referenced in 315 articles [sw00563]
  • R package mclust: Normal Mixture Modeling for Model...
  • R

  • Referenced in 10196 articles [sw00771]
  • R is a language and environment for statistical...
  • STATISTICA

  • Referenced in 37 articles [sw00913]
  • Since 1984, StatSoft has been developing the STATISTICA...
  • STAR

  • Referenced in 14 articles [sw02515]
  • STAR: ultrafast universal RNA-seq aligner. Motivation: Accurate...
  • NEURON

  • Referenced in 189 articles [sw03059]
  • Parallel network simulations with NEURON. The NEURON simulation...
  • UCI-ml

  • Referenced in 3444 articles [sw04074]
  • UC Irvine Machine Learning Repository. We currently maintain...
  • Bioconductor

  • Referenced in 328 articles [sw04205]
  • Bioconductor provides tools for the analysis and comprehension...
  • fda (R)

  • Referenced in 1571 articles [sw04511]
  • fda: Functional Data Analysis , These functions were developed...