• DEMiCs

  • Referenced in 21 articles [sw00196]
  • mixed cells. The underlying mixed cells play an essential role for computing all isolated zeros ... dynamic enumeration tree for finding all mixed cells. The dynamic enumeration method, proposed by Mizutani...
  • RAMSES

  • Referenced in 41 articles [sw18064]
  • with a tree-based data structure allowing recursive grid refinements on a cell-by-cell...
  • exafmm

  • Referenced in 8 articles [sw30090]
  • Based on Dual Tree Traversal for Many-core Architectures. The present work attempts to integrate ... list of cell-cell interactions by a dual tree traversal. A task-based threading model...
  • HOT

  • Referenced in 26 articles [sw10803]
  • implementation of the parallel hashed oct-tree code, and in particular its application to neighbor ... treecodes, and extend them to include general cell-cell interactions. Performance of the program...
  • GemIdent

  • Referenced in 3 articles [sw12192]
  • example, oranges in a tree (see quick demo) and cells in microscopic images (see histological...
  • IgTree

  • Referenced in 1 article [sw23151]
  • gene lineage trees. Lineage trees describe the microevolution of cells within an organism. They have ... been useful in the study of B cell affinity maturation, which is based on somatic ... implement an algorithm that can generate lineage trees from immunoglobulin variable region gene sequences...
  • rec-BTP

  • Referenced in 2 articles [sw34277]
  • heterogeneity from high-throughput sequencing data. Binary Tree Partition (BTP) is a novel combinatorial formulation ... problem of constructing the subpopulations of tumor cells from the variant allele frequencies of somatic...
  • Ct3d

  • Referenced in 3 articles [sw24070]
  • cells in 3D time-lapse microscopy data, based on computing cosegmentations between component trees representing...
  • SNESIM

  • Referenced in 7 articles [sw13366]
  • propose, through the introduction of search trees, an efficient solution to the extraction and storage ... occur when applying it to multimillion cell grids. Several other implementations of MPS simulation were ... training image and build the search tree, a simple method is described to minimize data...
  • SINBAD

  • Referenced in 3 articles [sw08729]
  • performed in the neocortex by the dendritic trees of individual pyramidal cells.par According ... model, the basic function of each pyramidal cell is to (i) discover and represent...
  • BaCelLo

  • Referenced in 9 articles [sw17174]
  • determine the subcellular location for eukaryotic cells with experimental high-throughput procedures. Computational procedures ... different SVMs organized in a decision tree. The system exploits the information derived from...
  • BitPhylogeny

  • Referenced in 5 articles [sw29661]
  • sample as well as the most likely tree connecting them. We validate our approach ... patterns in colon cancer and from single-cell exomes in myeloproliferative neoplasm...
  • FISHtrees

  • Referenced in 1 article [sw29659]
  • phylogenies. Tumors often harbor aneuploid or polyploid cell populations. Using a FISH probe to estimate ... ploidy can guide the creation of trees that model changes in ploidy and individual gene...
  • ScalaBLAST

  • Referenced in 7 articles [sw08812]
  • molecules that do most of a cell’s work. A typical bacterial genome contains ... code, making it possible to assemble a ”tree of life” by comparing new sequences against...
  • Arepo

  • Referenced in 2 articles [sw39391]
  • unstructured, dynamic Voronoi tessellation coupled to a tree-particle-mesh algorithm for the Poisson equation ... performed adopting local timestep constraints for each cell individually, solving the fluxes only across active...
  • VirtuaSchlieren

  • Referenced in 1 article [sw29131]
  • screen plane. To this purpose, kd-tree search algorithms are implemented to retrieve the position ... density at the center of each cell. The simple Gladstone–Dale and the Lorentz–Lorenz ... nearest neighbor (ANN) and a simplified kd-tree search technique. The latter is implemented...
  • ExpTreeDB

  • Referenced in 1 article [sw17286]
  • original experiments. For example, a tamoxifen-treated cell line experiment is hierarchically annotated as “agent ... retrieved results are exhibited by an interactive tree-structured graphics, which provides an overview...
  • OXenstored

  • Referenced in 1 article [sw10891]
  • mixing functional data-structures together with reference cell comparison, which is a limited form ... axiomatization of operations on the tree-like structure we used to represent the Xenstored database...
  • Fu-SulfPred

  • Referenced in 3 articles [sw36890]
  • critical information to understand molecular mechanisms of cell signaling transduction, stress response and regulation ... stratified structure of three kinds of decision trees in order to identify possible protein...
  • GeneClust

  • Referenced in 1 article [sw08358]
  • such as hierarchical clustering, K-means clustering, tree-structured vector quantization, self-organizing maps ... similar behavior across relevant tissue samples or cell lines. However, these procedures seek a single...