• gss

  • Referenced in 293 articles [sw06099]
  • implemented in R, an open-source clone of the popular S/S- PLUS language. Code...
  • CCFinder

  • Referenced in 15 articles [sw09683]
  • CCFinder: a multilinguistic token-based code clone detection system for large scale source code ... code clone is a code portion in source files that is identical or similar ... another. Since code clones are believed to reduce the maintainability of software, several code clone ... been proposed. This paper proposes a new clone detection technique, which consists of the transformation...
  • dclone

  • Referenced in 15 articles [sw23656]
  • package dclone: Data Cloning and MCMC Tools for Maximum Likelihood Methods. Low level functions ... estimating procedures for complex models using data cloning and Bayesian Markov chain Monte Carlo methods...
  • TETRA

  • Referenced in 12 articles [sw37891]
  • emerging field of environmental genomics, direct cloning and sequencing of genomic fragments from complex microbial ... called metagenome-approach is that the cloned fragments often lack suitable phylogenetic marker genes, rendering ... identification of clones that are likely to originate from the same genome difficult or impossible...
  • MEGAN

  • Referenced in 17 articles [sw33189]
  • complete sequences of environmental fosmid and BAC clones, or environmental assemblies. Emerging sequencing-by-synthesis...
  • DECKARD

  • Referenced in 8 articles [sw09181]
  • Accurate Tree-Based Detection of Code Clones. Detecting code clones has many software engineering applications ... implemented our tree similarity algorithm as a clone detection tool called DECKARD and evaluated...
  • BioHMM

  • Referenced in 13 articles [sw10920]
  • biological factors (e.g. the distance between adjacent clones) in the segmentation process. Availability: BioHMM...
  • SPAdes

  • Referenced in 13 articles [sw17004]
  • bacteria in various environments cannot be cloned in the laboratory and thus cannot be sequenced...
  • MAGDA

  • Referenced in 12 articles [sw02568]
  • means of features such as migration, cloning, messaging and other provided mechanisms. In this paper...
  • AGREE

  • Referenced in 10 articles [sw23738]
  • specify different embeddings. For example when cloning an item, there may be a need...
  • CloneDigger

  • Referenced in 5 articles [sw08953]
  • Clone Digger aimed to detect similar code in Python and Java programs. The synonyms ... term ”similar code” are ”clone” and ”duplicate code...
  • FASTA3

  • Referenced in 7 articles [sw15724]
  • routine steps in biochemical characterization, from newly cloned proteins to entire genomes...
  • ECgene

  • Referenced in 4 articles [sw17328]
  • variant, and they can be regarded as clone evidence for the corresponding isoform. The reliability ... members and from the minimum number of clones required to reconstruct all exons...
  • d2_cluster

  • Referenced in 5 articles [sw28788]
  • genes that have yet to be positionally cloned or obtained directly through genomic sequencing...
  • RuleMerger

  • Referenced in 3 articles [sw22849]
  • automating this task. The approach employs {it clone detection} for identifying overlapping rule portions ... approach harnesses state-of-the-art clone detection and clustering techniques and includes a specialized...
  • ARIES

  • Referenced in 3 articles [sw26892]
  • ARIES: refactoring support tool for code clone. In this paper, we explain our refactoring support ... tool Aries. Aries characterizes code clones by several metrics, and suggests how to remove them...
  • CGHclassify

  • Referenced in 4 articles [sw17253]
  • Array-based comparative genomic hybridization (aCGH). aCGH Clone Classification R Software...
  • BitPhylogeny

  • Referenced in 4 articles [sw29661]
  • jointly estimate the number and composition of clones in the sample as well...
  • subgraph2vec

  • Referenced in 4 articles [sw36496]
  • realworld program analysis tasks, namely, code clone and malware detection, subgraph2vec outperforms state...
  • CloneDifferentiator

  • Referenced in 1 article [sw26893]
  • CloneDifferentiator: Analyzing clones by differentiation. Clone detection provides a scalable and efficient way to detect ... explanation of differences of functions performed by clones and variations of control and data flows ... clones. We refer to such differences as semantic differences of clones. Understanding these semantic differences ... essential to correctly interpret cloning information and perform maintenance tasks on clones. Manual analysis...