• Dryad

  • Referenced in 20 articles [sw08916]
  • general-purpose distributed execution engine for coarse-grain data-parallel applications. A Dryad application combines...
  • NFsim

  • Referenced in 11 articles [sw22256]
  • advanced and flexible options for simulating coarse-grained representations of complex nonlinear reaction mechanisms ... Emonet T. Efficient modeling, simulation and coarse-graining of biological complexity with NFsim. Nature Methods...
  • ESPResSo

  • Referenced in 15 articles [sw06335]
  • Molecular Dynamics many-particle simulations of ”coarse-grained” bead-spring models as they are used...
  • Exa-Dune

  • Referenced in 11 articles [sw32962]
  • scalability is facilitated by exploiting massive coarse grained parallelism offered by multiscale and uncertainty quantification...
  • FoCaLiZe

  • Referenced in 10 articles [sw12384]
  • refine a development from the coarse-grain specification to the fully defined executable program...
  • STMBench7

  • Referenced in 9 articles [sw08814]
  • more scalable than explicit coarse-grained locking and easier to use than fine-grained locking...
  • REACH

  • Referenced in 6 articles [sw00788]
  • program package for residue-scale coarse-grained biomolecular simulation. The program calculates the force constants ... atomistic simulation results onto a coarse-grained force field in an efficient automated procedure without...
  • HiFlow3

  • Referenced in 8 articles [sw06354]
  • systems – is introduced on two levels: coarse-grained parallelism by means of distributed grids...
  • simpA

  • Referenced in 7 articles [sw00863]
  • context is to devise higher-level, coarse-grained abstractions that would help building concurrent programs...
  • Parkway

  • Referenced in 7 articles [sw12863]
  • partitioning tool. We recently proposed a coarse-grained parallel multilevel algorithm...
  • OpenUH

  • Referenced in 7 articles [sw13038]
  • they should measure, selectively considering both coarse grain and fine grain regions (control flow level...
  • SELM

  • Referenced in 3 articles [sw17574]
  • Fluctuating hydrodynamics methods for dynamic coarse-grained implicit-solvent simulations in LAMMPS. We introduce ... dynamic thermostats to extend implicit-solvent coarse-grained (IS-CG) models by incorporating kinetic contributions ... Lagrangian method (SELM). SELM couples the coarse-grained microstructure degrees of freedom to continuum stochastic...
  • SPINAL

  • Referenced in 5 articles [sw08319]
  • phases. In the first coarse-grained alignment phase we construct all pairwise initial similarity scores...
  • parXXL

  • Referenced in 3 articles [sw20705]
  • scalable fine grained development for large coarse grained platforms. We present a new integrated environment ... cellular computing and other fine grained applications. It is based upon previous developments concerning cellular ... computing environments (the ParCeL family) and coarse grained algorithms (the SSCRAP toolbox). It is aimed...
  • iMod

  • Referenced in 4 articles [sw35118]
  • proposed framework operates at different coarse-grained levels and offers an efficient framework to conduct...
  • OpTIX-II

  • Referenced in 4 articles [sw01331]
  • focus of attention is put on coarse- grained parallelization and its implementation on multi-computer...
  • FlowDroid

  • Referenced in 4 articles [sw26741]
  • Android use a number of coarse-grain approximations that can yield high numbers of missed...
  • Ibisco

  • Referenced in 2 articles [sw14733]
  • molecular dynamics simulation package for coarse-grained simulation. BIsCO is a parallel molecular dynamics simulation ... package developed specially for coarse-grained simulations with numerical potentials derived by the iterative Boltzmann ... loss of degrees of freedom by coarse-graining. The reverse nonequilibrium molecular dynamics simulation method...
  • Cgaln

  • Referenced in 2 articles [sw22989]
  • RESULTS: We previously proposed the CGAT (Coarse-Grained AlignmenT) algorithm, which performs an alignment ... nucleotide level. The former is ”coarse-grained” alignment that can explore genomic rearrangements and reduce...
  • MAVEN

  • Referenced in 2 articles [sw35124]
  • atomic coordinates or by employing various coarse-graining procedures. Visualization can be performed either with ... computational speed of the coarse-grained ENMs. Analysis options are available to further...